General information for g4719.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase, mitochondrial.
Parent gene
- The parent gene g4719 is located on chr_2: 4372274..4373431 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4719 | g4719.t1 | TSS | g4719.t1 | 4372208 | 4372208 |
| chr_2 | g4719 | g4719.t1 | isoform | g4719.t1 | 4372274 | 4373431 |
| chr_2 | g4719 | g4719.t1 | exon | g4719.t1.exon1 | 4372274 | 4372505 |
| chr_2 | g4719 | g4719.t1 | cds | g4719.t1.CDS1 | 4372274 | 4372505 |
| chr_2 | g4719 | g4719.t1 | exon | g4719.t1.exon2 | 4372869 | 4373431 |
| chr_2 | g4719 | g4719.t1 | cds | g4719.t1.CDS2 | 4372869 | 4373431 |
| chr_2 | g4719 | g4719.t1 | TTS | g4719.t1 | 4373822 | 4373822 |
Sequences
>g4719.t1 Gene=g4719 Length=795
ATGGTTCAATCAGATAAAGAACTTCTTGATAGAAATATTCTTCCATCAGAACAAAAGAGT
TTTTCGCCGTTAGCAAAAGATTGGTGGAATAAGAAAAATGGACCACTATGTGTAGTTCAT
GACATGAATGATTTTCGCATAAAGCTCATTTTTGATTATCTCATTTCAACTGGTGTTTTG
AAACCTTGGCAAAGGAATCAACCGGATGCACTTCAAGGATTGAAAATTTTAGACCTTGGA
TGTGGTGGAGGTATTTTGACGGAACCTCTTGCAAGACTTAAAGCACAAATGACGGGAATT
GATCCAAATGAAGATCTGATTGCAGTGGCAAAGGAGCATATTGAGCACAAAAAAGATATT
AGCGATAATGTTGTTTACTTGACAGAAACTATTGAGGAACATTGCGAGAAATTTTCGAAT
TATTACGATCTTGTTATTTGCAGTGAAGTTCTTGATCATGTTCCAGATAGAAAGTCGATT
CTTGTTGCTGCTTCAGTTCTGAAAAATGGTGGAAGTATTTTTGTTTCGACTTTCAATAAG
ACTTTTTGGTCTTGGTTTCTTGCAATCGTTTGTGGTGAATATATTTTGAGAGCTATACCG
ATCGGAACTCATCACTATAAAATGTTTATTTCACCCCAAGATGTTTCGGATATTCTAAAA
GAACTAAATTTTAAGACAAAAAGTGTGAAAGGTTTTATCTATAATTTTATTACTAGAAAG
TTTTATGTTCATAATTGGATTGGATTCAGCTATGCATTGCATGCTGTTAAAGGAACGGAA
AATTCAACTGAATGA
>g4719.t1 Gene=g4719 Length=264
MVQSDKELLDRNILPSEQKSFSPLAKDWWNKKNGPLCVVHDMNDFRIKLIFDYLISTGVL
KPWQRNQPDALQGLKILDLGCGGGILTEPLARLKAQMTGIDPNEDLIAVAKEHIEHKKDI
SDNVVYLTETIEEHCEKFSNYYDLVICSEVLDHVPDRKSILVAASVLKNGGSIFVSTFNK
TFWSWFLAIVCGEYILRAIPIGTHHYKMFISPQDVSDILKELNFKTKSVKGFIYNFITRK
FYVHNWIGFSYALHAVKGTENSTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4719.t1 | CDD | cd02440 | AdoMet_MTases | 75 | 178 | 0.000 |
| 6 | g4719.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 17 | 257 | 0.000 |
| 4 | g4719.t1 | Hamap | MF_00472 | Ubiquinone biosynthesis O-methyltransferase [ubiG]. | 17 | 258 | 31.985 |
| 2 | g4719.t1 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 12 | 239 | 0.000 |
| 3 | g4719.t1 | PANTHER | PTHR43464:SF25 | UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL | 12 | 239 | 0.000 |
| 1 | g4719.t1 | Pfam | PF13847 | Methyltransferase domain | 73 | 191 | 0.000 |
| 5 | g4719.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 22 | 248 | 0.000 |
| 7 | g4719.t1 | TIGRFAM | TIGR01983 | UbiG: 3-demethylubiquinone-9 3-O-methyltransferase | 18 | 247 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008425 | 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity | MF |
| GO:0006744 | ubiquinone biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed