General information for g4746.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1-1.
Parent gene
- The parent gene g4746 is located on chr_2: 4623883..4625719 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4746 | g4746.t1 | TSS | g4746.t1 | 4623801 | 4623801 |
| chr_2 | g4746 | g4746.t1 | isoform | g4746.t1 | 4623883 | 4625719 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon1 | 4623883 | 4623899 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS1 | 4623883 | 4623899 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon2 | 4623977 | 4624049 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS2 | 4623977 | 4624049 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon3 | 4624555 | 4624614 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS3 | 4624555 | 4624614 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon4 | 4624691 | 4624981 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS4 | 4624691 | 4624981 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon5 | 4625415 | 4625501 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS5 | 4625415 | 4625501 |
| chr_2 | g4746 | g4746.t1 | exon | g4746.t1.exon6 | 4625567 | 4625719 |
| chr_2 | g4746 | g4746.t1 | cds | g4746.t1.CDS6 | 4625567 | 4625719 |
| chr_2 | g4746 | g4746.t1 | TTS | g4746.t1 | NA | NA |
Sequences
>g4746.t1 Gene=g4746 Length=681
ATGGCACCAATGACATTATTTGTTTCTAATATGAGTACACCTTCAAGAGGACTTTTACTT
TTAGTACGGAATATTAGTCTTGATATTGATATAAAACAAGTCAATTTACTTGCTGGCGAA
CATCGACGTAGTGAATTCTCGCGGATTAATCCACGTTGCTGTGTACCAACACTTATTGAC
AATGACGGACATCATGAATTTATATTATGGGAGAGTAAGGCAATAATGATTTATCTTGCT
GAAAAATGTCAGCGCTATGGACATTCACTGTACCCAAAATGTATAAAAACGAGAGCAATT
ATTCATCAAAGATTGTTTCATGATGCCTCAGAATTGTACGTACGAATACTTGACATTGCA
AACTTAGCCTTTTCTGGTGTCAGTTCAACAATCACTACACAGCATAAAGAAAATTTACGC
AAAGCTTTGCAAATATTAGAGCTATTCCTCGAAGGACATGACTTCTTTGCCGGCAATCAC
ATGACCATTTGTGATTATGCTTATTTGGCATCTATTTGCACTCTTGTGCATTTCGGTTTC
GACATTTCACAGTTCACGCACATAAATCAATGGTATAAAAGAATGAGTTTATGTGAAGGT
TTCAAAGAGTGTGAAACTGGTGCTGAAGAGTTTGGCATGATGGTGAAAGGAAAGTTATCA
AATTCATTTAAAGATGTCTGA
>g4746.t1 Gene=g4746 Length=226
MAPMTLFVSNMSTPSRGLLLLVRNISLDIDIKQVNLLAGEHRRSEFSRINPRCCVPTLID
NDGHHEFILWESKAIMIYLAEKCQRYGHSLYPKCIKTRAIIHQRLFHDASELYVRILDIA
NLAFSGVSSTITTQHKENLRKALQILELFLEGHDFFAGNHMTICDYAYLASICTLVHFGF
DISQFTHINQWYKRMSLCEGFKECETGAEEFGMMVKGKLSNSFKDV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g4746.t1 | CDD | cd03177 | GST_C_Delta_Epsilon | 96 | 212 | 0.0000000 |
| 7 | g4746.t1 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 88 | 0.0000000 |
| 6 | g4746.t1 | Gene3D | G3DSA:1.20.1050.10 | - | 89 | 221 | 0.0000000 |
| 3 | g4746.t1 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 3 | 216 | 0.0000000 |
| 2 | g4746.t1 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 4 | 81 | 0.0000000 |
| 1 | g4746.t1 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 131 | 195 | 0.0000004 |
| 9 | g4746.t1 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 2 | 87 | 18.1070000 |
| 8 | g4746.t1 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 94 | 226 | 16.3710000 |
| 11 | g4746.t1 | SFLD | SFLDG00358 | Main (cytGST) | 3 | 219 | 0.0000000 |
| 12 | g4746.t1 | SFLD | SFLDG01153 | Main.4: Theta-like | 3 | 219 | 0.0000000 |
| 4 | g4746.t1 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 92 | 0.0000000 |
| 5 | g4746.t1 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 87 | 211 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed