Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative F-box-like/WD repeat-containing protein ebi.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4867 g4867.t7 isoform g4867.t7 5571017 5571848
chr_2 g4867 g4867.t7 exon g4867.t7.exon1 5571017 5571441
chr_2 g4867 g4867.t7 cds g4867.t7.CDS1 5571017 5571400
chr_2 g4867 g4867.t7 exon g4867.t7.exon2 5571502 5571547
chr_2 g4867 g4867.t7 exon g4867.t7.exon3 5571614 5571721
chr_2 g4867 g4867.t7 exon g4867.t7.exon4 5571791 5571848
chr_2 g4867 g4867.t7 TSS g4867.t7 5572019 5572019
chr_2 g4867 g4867.t7 TTS g4867.t7 NA NA

Sequences

>g4867.t7 Gene=g4867 Length=637
ATGTCATTTTCATCAGACGAAGTGAACTTTCTTGTTTATAGATATCTTCAGGAATCGGGA
TTCTTGCATTCGGCGTATATGTTTGGTATTGAATCACACATTTCGCAGAGTAACATCAAT
GGAGCACTTGTTCCACCCGCAGCATTATTATCAATAATACAAAAAGGCTTGCAGTATACT
GAAGCAGAAATAAGTGTGGGAGAAGATGGTGAAAACAAAGATAGTGGAAAAATTAAGCCT
AATCGATGCAGTGATGCCAGAAGTTGTTGCAAATCGTCAAAATCAATTGAATAAATCAAA
AGCGAATATGTCAGAACCAGCAGAAACAAATGGAGAGCAAACTGCAGAATCAACAAATGC
AACAGAAAAAACAGAGGGTGCAATTAAAGATGATCCAGATTCAGATAATTTCATTGAAAT
CTCACAAAATAAAGCGACAATTTTGCGAGGACATGAAAGTGAAGTATTTATTTGTGCTTG
GAATCCAATGCGTGATTTGCTAGCGAGTGGATCTGGCGATTCGACTGCACGTATTTGGGA
TATGTCAGATAATGTTGCAACCAGTAATCAACTTGTTTTGAGGCATTGTATCAAACAAGG
AGGAGCTGAAGTACCATCGAATAAAGATGTCACATCT

>g4867.t7 Gene=g4867 Length=128
MPEVVANRQNQLNKSKANMSEPAETNGEQTAESTNATEKTEGAIKDDPDSDNFIEISQNK
ATILRGHESEVFICAWNPMRDLLASGSGDSTARIWDMSDNVATSNQLVLRHCIKQGGAEV
PSNKDVTS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4867.t7 Gene3D G3DSA:2.130.10.10 - 51 128 2.8E-21
8 g4867.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 51 -
9 g4867.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 38 -
2 g4867.t7 PANTHER PTHR22846 WD40 REPEAT PROTEIN 17 128 1.3E-34
3 g4867.t7 PANTHER PTHR22846:SF40 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 17 128 1.3E-34
1 g4867.t7 Pfam PF00400 WD domain, G-beta repeat 62 96 3.7E-6
6 g4867.t7 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 83 97 -
10 g4867.t7 ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 64 105 13.659
11 g4867.t7 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 64 105 14.953
7 g4867.t7 SMART SM00320 WD40_4 57 96 2.6E-8
4 g4867.t7 SUPERFAMILY SSF50978 WD40 repeat-like 62 100 3.2E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed