General information for g492.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Balbiani ring protein 3.
Parent gene
- The parent gene g492 is located on chr_3: 3720938..3725691 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g492 | g492.t1 | isoform | g492.t1 | 3720938 | 3725691 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon1 | 3720938 | 3720977 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS1 | 3720938 | 3720977 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon2 | 3721056 | 3721220 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS2 | 3721056 | 3721220 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon3 | 3721280 | 3721459 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS3 | 3721280 | 3721459 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon4 | 3721517 | 3721651 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS4 | 3721517 | 3721651 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon5 | 3721859 | 3721901 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS5 | 3721859 | 3721901 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon6 | 3723812 | 3723873 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS6 | 3723812 | 3723873 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon7 | 3724249 | 3724332 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS7 | 3724249 | 3724332 |
| chr_3 | g492 | g492.t1 | exon | g492.t1.exon8 | 3724388 | 3725691 |
| chr_3 | g492 | g492.t1 | cds | g492.t1.CDS8 | 3724388 | 3725691 |
| chr_3 | g492 | g492.t1 | TTS | g492.t1 | 3725805 | 3725805 |
| chr_3 | g492 | g492.t1 | TSS | g492.t1 | NA | NA |
Sequences
>g492.t1 Gene=g492 Length=2013
ATGAAAAGACTTAACTTGAATTTTTTATTGTTTTTAATTTGCATCAGTTTGCAGATTCAT
TTTGCACATTTATGTGAGCAAGTTCCAATCTGTAGTGGTCTACAAGTTCTAGATAAAGAT
GCATGTCAATGTGTTTGTTTGAAAGATAGTAGCATTTATGAATGTCCATATCCTGAATAT
TCTTCTGAACCGGATGCTTGTCCATGCATAAATGTACCACCAAGTGATGACAAAAGTATT
TCATTTCCTCCTGTTCCTTGTGAGACATTTATTGCTCCAAATTGTGTTTTTCCAAAAATA
TGGGATCCTTATCTCTGCAGATGTGTTTGTAGTTATGCAATTGACTGTATGCATCAATAT
GTTTTGAATCCTAATACTTGTAATTGCGAATGTAGAAATTCACCATTCACAAGATGTCCA
CCAAATCAAATTTTCAATCAGCAAACTTGTAAATGTGAATGCAAAGATAATTGTGGTGAA
TGTTTAAGTCCACATGTTTGGAATTCTGATAAATGCACTTGTGAGTGCAAAGATGTACAA
AAATGTCCCGCAAATAAATTCTGGAATTGGAATACTTGTTCTTGTGATTGCATTAACATT
GAAAGAAGATGCTGCAAACCAAAAGTATGGAAATCTGATATTTGTGACTGTGGCTGTGAA
ACACCGTTTAGAATTTGTCCAAGAGGTCAAATTTGGAGTGACGTTTATTGCAAATGCATT
TGTCCACCAAGAACTTGTCCTATAAATTTCATTTGGAATCCAATTCGGTGTCAATGCGAA
TGTGATCCAGAAATGATAAAAAAATGTGAAAATTGGCCAGGGCATTATTTTGATCCATTT
AATTGCCTATGTCCTTGCAAAAGAGTCAAATGTCCACCAAATTATATTCAAAATCCTTTC
ACATGCAAATGCGACTGTAATATTCAATGTCCACCAAATTTAGCTCCTGATTATGACAAT
TGTCGATGTATTTGTAAATCAAGTGAAGAAGAAATTGCAAAATGTGCATCACTTTCAAAT
CATTACTGGAATTATGAAAAATGCATTTGTGAATGCGATAAAATTCCAAACTGTGATTTG
CCATTTGTTCAAAATTTTGATACTTGCGAATGTGAATGTAAACTTAAATGTCCACCAAAT
TTAAGTCTCAATCCAGAAAAATGTACATGTGATTGTGATGTTAAACCTGAAATAATAAAA
GATTGCTATCAAGATGGCTTGCATATTTGGAATAAAGAAAATTGCAGTTGCGATTGTTTA
GAGATAATCGATTGTCCACCAAATTATGTTCAATCACCAACAACTTGTAAATGCGAATGT
AACATAAAATGCCCCAAAAATTTTATTCCAAATTATGAAAAATGTATTTGTGAATGTGAT
CCAAAAGGTGAAGAAATTTGCAAACAAAAAGTCAATCATTATTGGGATAGTAAGCAATGT
GCATGCCTATGTGATAGAGTATGTGCTCCAAATTTTATACAAGATGAAAATTGTGAATGC
ATTTGTGAAAATTATGAAGAACGTGCAAAACTTTGTGAAGCTGATGGCATGCATGTCTTT
AATAAAGAAAAATGCAGCTGTGAATGCAAAGAAAATGATTGTCGTGAGCCAAAAATCCAA
AATACTCAAACTTGCAAATGCGAATGTCCAAAATGTCCAAATTTGAATTTTTATCAAGAT
CCTGAGACATGTGACTGCAAATGTAATGTTAATAAAGATGTAATAAAAAAATGCTATGCT
GATGGACTTCATTATTTCAACAAAGAGACTTGCAGTTGTAATTGCAACAGAATTACTGAT
TGTCCTTATCCATTTATTCAAGACCAAGAAACATGCAAATGTACATGCCCAAAATGTTTA
CCAAATTTTAAAAATGATCCAAAAACTTGTGAATGCGTTTGTGCATTGACAAAAGAAACT
TGTACTGAAAATTTTGATCCCATTAATTGCGTTTGCCGATTCAGAGGAAAATATGATTTT
GTATTCTATGAAAAGCAAAATGTTGAATTGTAA
>g492.t1 Gene=g492 Length=670
MKRLNLNFLLFLICISLQIHFAHLCEQVPICSGLQVLDKDACQCVCLKDSSIYECPYPEY
SSEPDACPCINVPPSDDKSISFPPVPCETFIAPNCVFPKIWDPYLCRCVCSYAIDCMHQY
VLNPNTCNCECRNSPFTRCPPNQIFNQQTCKCECKDNCGECLSPHVWNSDKCTCECKDVQ
KCPANKFWNWNTCSCDCINIERRCCKPKVWKSDICDCGCETPFRICPRGQIWSDVYCKCI
CPPRTCPINFIWNPIRCQCECDPEMIKKCENWPGHYFDPFNCLCPCKRVKCPPNYIQNPF
TCKCDCNIQCPPNLAPDYDNCRCICKSSEEEIAKCASLSNHYWNYEKCICECDKIPNCDL
PFVQNFDTCECECKLKCPPNLSLNPEKCTCDCDVKPEIIKDCYQDGLHIWNKENCSCDCL
EIIDCPPNYVQSPTTCKCECNIKCPKNFIPNYEKCICECDPKGEEICKQKVNHYWDSKQC
ACLCDRVCAPNFIQDENCECICENYEERAKLCEADGMHVFNKEKCSCECKENDCREPKIQ
NTQTCKCECPKCPNLNFYQDPETCDCKCNVNKDVIKKCYADGLHYFNKETCSCNCNRITD
CPYPFIQDQETCKCTCPKCLPNFKNDPKTCECVCALTKETCTENFDPINCVCRFRGKYDF
VFYEKQNVEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g492.t1 | PANTHER | PTHR11633:SF1 | LD28763P | 31 | 133 | 7.5E-28 |
| 11 | g492.t1 | PANTHER | PTHR11633 | PLATELET-DERIVED GROWTH FACTOR | 31 | 133 | 7.5E-28 |
| 5 | g492.t1 | PANTHER | PTHR11633:SF1 | LD28763P | 125 | 207 | 7.5E-28 |
| 9 | g492.t1 | PANTHER | PTHR11633 | PLATELET-DERIVED GROWTH FACTOR | 125 | 207 | 7.5E-28 |
| 6 | g492.t1 | PANTHER | PTHR11633:SF1 | LD28763P | 213 | 288 | 7.5E-28 |
| 10 | g492.t1 | PANTHER | PTHR11633 | PLATELET-DERIVED GROWTH FACTOR | 213 | 288 | 7.5E-28 |
| 8 | g492.t1 | PANTHER | PTHR11633:SF1 | LD28763P | 386 | 468 | 7.5E-28 |
| 12 | g492.t1 | PANTHER | PTHR11633 | PLATELET-DERIVED GROWTH FACTOR | 386 | 468 | 7.5E-28 |
| 4 | g492.t1 | Pfam | PF03128 | CXCXC repeat | 35 | 46 | 0.015 |
| 3 | g492.t1 | Pfam | PF03128 | CXCXC repeat | 142 | 154 | 0.04 |
| 2 | g492.t1 | Pfam | PF03128 | CXCXC repeat | 518 | 529 | 0.065 |
| 16 | g492.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 27 | - |
| 17 | g492.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 18 | g492.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 19 | g492.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 27 | - |
| 15 | g492.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 670 | - |
| 14 | g492.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 1 | g492.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 13 | g492.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed