Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable 26S proteasome non-ATPase regulatory subunit 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4920 g4920.t5 TTS g4920.t5 5963285 5963285
chr_2 g4920 g4920.t5 isoform g4920.t5 5963398 5964937
chr_2 g4920 g4920.t5 exon g4920.t5.exon1 5963398 5963969
chr_2 g4920 g4920.t5 exon g4920.t5.exon2 5964055 5964437
chr_2 g4920 g4920.t5 cds g4920.t5.CDS1 5964259 5964437
chr_2 g4920 g4920.t5 exon g4920.t5.exon3 5964498 5964937
chr_2 g4920 g4920.t5 cds g4920.t5.CDS2 5964498 5964933
chr_2 g4920 g4920.t5 TSS g4920.t5 5965056 5965056

Sequences

>g4920.t5 Gene=g4920 Length=1395
CAAAATGGTTGCAGTACAAGATGTGGAAATGGAAGTCATTGAAAGTGAAAATACAGAACA
GGAGCAACAGAAGAAAGAATCGGATGTGAATACAATTGTCCAAGAGATTCGAGAACATGT
AAAGCAAATTGATAAAGCAGTAGCAAGCAAAGAACCGCGTTTTATTCTTCGTGTTTTAAG
ATCTCTACCAAATACACGTAGAAAATTGACTCCCGTTGTTCTTAGATCACTCGCAAATCA
AATCTATCCTGTATCTGAACGAGATGCTATTCTTGTATATGTCGAGGAAGTAACTAGTGG
AGAGCAGCAAAATGAAAGTGCAAGTGCACGTCCTCGCGCAACAATTAAAACTCCACTTCC
AGAAGTTGATGCATATTTTCACTTATTAGCTCTTGTTCGTTTGTTAGACGCGAAATTGCT
TGATAAAGCATCTCATTGTGCTCAACAGCTCATGACAAAAATTATGTCTCAGAATCGTAG
ATCATTAGATCTTATTGCTGCAAAGAGCTATTTCTATCATTCACGAGTTGCAGAATTAAC
AAATAAATTGGATACAATTCGTGGATTTTTACATGCTCGTCTAAGAACTGCAACTCTACG
TAATGATTTTGAGGGATAAGCTGTCCTAATTAATTGTCTTTTACGCAATTACTTGCATTA
TTCATTATATGATCAAGCTGATAAATTAGTTAACAAATCAGTCTTTCCTGAAACTGCAAG
TAACAATGAATGGGCCCGTTTTCTTTATTATTTGGGTCGTATAAAGGCTGCAAAATTGGA
ATATAGTGTTGCACATAAGCATCTTATTCAGGCTATGCGAAAGAACGACAAATTTTCAGA
CAAGCAGCTCTTCGTCGTTCACTCGTTCCTTATTTTCAACTTACACAAGCTGTAAGATTG
GGAAATCTGAAACGTTTCGGTGAAGTGCTTACCAATTATGGTGAAAAATTCCGTCAAGAT
CATACATTTACACTCATCATTCGTTTGAGACATAATGTCATTAAGACTGCAATAAGATCA
ATTGGACTCTCATATTCATGCATTTCACCAGCTGATATAGCCAAAAAATTAGGAATTGAT
TCTAAGGAGGATGCAGAATTTATTGTATCGAAAGCTATTCGTGATGGTGTTATTGAAGCA
ACATTAGATCCAGAAAAAGGATATATGCGCAGCAAAGAGAGCACAGATATATATTCAACT
CGTGAGCCTCAATTGGCTTTTCATCAACGCATCACTTTCTGCTTAGATTTGCATAATCAA
TCAGTTAAAGCAATGCGATATCCACCAAAATCATATGGCAAGGATTTGGAAAGTGCTGAA
GAACGAATTGAACGTGAGCAACAAGAAGTTGAATTAGCAAAGGAAATGGCAGAAGATGAT
GATGATGGTTTTTAA

>g4920.t5 Gene=g4920 Length=204
MVAVQDVEMEVIESENTEQEQQKKESDVNTIVQEIREHVKQIDKAVASKEPRFILRVLRS
LPNTRRKLTPVVLRSLANQIYPVSERDAILVYVEEVTSGEQQNESASARPRATIKTPLPE
VDAYFHLLALVRLLDAKLLDKASHCAQQLMTKIMSQNRRSLDLIAAKSYFYHSRVAELTN
KLDTIRGFLHARLRTATLRNDFEG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4920.t5 Coils Coil Coil 4 24 -
3 g4920.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 27 -
1 g4920.t5 PANTHER PTHR10758:SF2 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 6 204 4.8E-43
2 g4920.t5 PANTHER PTHR10758 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 6 204 4.8E-43

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0030234 enzyme regulator activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed