Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4950 g4950.t6 TTS g4950.t6 6145318 6145318
chr_2 g4950 g4950.t6 isoform g4950.t6 6146091 6146530
chr_2 g4950 g4950.t6 exon g4950.t6.exon1 6146091 6146444
chr_2 g4950 g4950.t6 cds g4950.t6.CDS1 6146092 6146444
chr_2 g4950 g4950.t6 exon g4950.t6.exon2 6146503 6146530
chr_2 g4950 g4950.t6 cds g4950.t6.CDS2 6146503 6146530
chr_2 g4950 g4950.t6 TSS g4950.t6 6146616 6146616

Sequences

>g4950.t6 Gene=g4950 Length=382
ATGCATGTAAACGAAACCATTCCATTTGAACAATCGTGGATTGAAAATGTCAATATTCAA
TTGCGAGGTTTAGAAGCGGCTGTAAAATTAATTGTTTCTCATTGTCATGTCACATCTGAT
GAGAACATTGTTGCATTTGCTTTGAAAGCATTGACTCTTACAGATTTAACGACATTAGCA
GGAGATGATTGTGAATCTAATGTTGAACGATTATGTGTTCGTGCTTGTTATCCATTTTTC
AATCATTCCGTTAAAAATGACTCAAATGAGTTCTATAAGAGTTTACATACAGCTGCTGTG
TGTGTTTATCCATCTAAAGTGAAGAATGCTTATGACACTTTAAAGAGATTGAATATGCTC
GATAAAGTTCAAATAGCTTCGG

>g4950.t6 Gene=g4950 Length=127
MHVNETIPFEQSWIENVNIQLRGLEAAVKLIVSHCHVTSDENIVAFALKALTLTDLTTLA
GDDCESNVERLCVRACYPFFNHSVKNDSNEFYKSLHTAAVCVYPSKVKNAYDTLKRLNML
DKVQIAS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4950.t6 Gene3D G3DSA:3.20.20.70 Aldolase class I 41 127 0
1 g4950.t6 PANTHER PTHR10889 DEOXYRIBOSE-PHOSPHATE ALDOLASE 3 127 0
2 g4950.t6 PANTHER PTHR10889:SF3 DEOXYRIBOSE-PHOSPHATE ALDOLASE 3 127 0
3 g4950.t6 SUPERFAMILY SSF51569 Aldolase 44 126 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004139 deoxyribose-phosphate aldolase activity MF
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC
GO:0009264 deoxyribonucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed