General information for g5009.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Restin-like protein.
Parent gene
- The parent gene g5009 is located on chr_2: 6422853..6423614 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5009 | g5009.t1 | isoform | g5009.t1 | 6404447 | 6422853 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon1 | 6404447 | 6404708 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS1 | 6404447 | 6404708 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon2 | 6404764 | 6408340 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS2 | 6404764 | 6408340 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon3 | 6408404 | 6408479 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS3 | 6408404 | 6408479 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon4 | 6408617 | 6408634 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS4 | 6408617 | 6408634 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon5 | 6408736 | 6408846 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS5 | 6408736 | 6408846 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon6 | 6409854 | 6409964 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS6 | 6409854 | 6409964 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon7 | 6411092 | 6411157 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS7 | 6411092 | 6411157 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon8 | 6411368 | 6411551 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS8 | 6411368 | 6411551 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon9 | 6411616 | 6411781 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS9 | 6411616 | 6411781 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon10 | 6411845 | 6412078 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS10 | 6411845 | 6412078 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon11 | 6412150 | 6412302 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS11 | 6412150 | 6412302 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon12 | 6412791 | 6412853 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS12 | 6412791 | 6412853 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon13 | 6413085 | 6413216 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS13 | 6413085 | 6413216 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon14 | 6413876 | 6413995 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS14 | 6413876 | 6413995 |
| chr_2 | g5009 | g5009.t1 | exon | g5009.t1.exon15 | 6422640 | 6422853 |
| chr_2 | g5009 | g5009.t1 | cds | g5009.t1.CDS15 | 6422640 | 6422853 |
| chr_2 | g5009 | g5009.t1 | TSS | g5009.t1 | 6423766 | 6423766 |
| chr_2 | g5009 | g5009.t1 | TTS | g5009.t1 | NA | NA |
Sequences
>g5009.t1 Gene=g5009 Length=5487
ATGAGTGAATCAAATGAAGAACAAAAGTCGATTCCTCCATCTTCAGAGGAATATGCAGCA
TCATTAATTTTGAAATCAAGTAAACCAAGTGGAATTAAGCCTCCATCAACTGCATCATTA
TTCTCATCTGATTCATCAGCACATAGAGTCAGTAGAATTTGTTCAAGTCATCAAAAAAAA
CCAGATCTTCCTACAGCGGCAACACCAAACAAAATATCAGTTGCTTTTGTTGTTAAACAT
GAAAACACCACACTTTCAGGTGAACTCAGTAACAACGACTACGGTGACACAATGCGACGT
CAAAGCGATGATTATAAAACACACTATTTACCAGATGTAAGTGAAGAAAGCGAATATGAC
TTGCTATATGACCGTTTTGGACTTGGTTATCGCTCATCTAAATCTAAATCACAATCACCT
GATCCATTTCGATTGTACAAGTATTCGCCCGATCGCAAAAGTTCAAGTGGTATATCCTCC
TCTGTATCACCAGACTTTTTTGAAGCCACTGGCAGACGATCAAGCTCAGATCATGGAGCA
GATTTAACGACAGACACAGATAGTTTTATGATAGGAAATCGAGTTTATGTTGGAGGAGTT
AAACCCGGTCGTATTACTTTTATTGGCGAAGTTCATTTCGCCCCGGGTGAATGGGCTGGA
GTTGTTTTAGATGAGCCAGAAGGCAAAAATGATGGTGCAGTTAGTGGAAAACGCTATTTT
CAGTGTGAACCTAAAAAGGGAATATTTTCACGCCTCACACGACTAACTCGTGAACCATTA
TCATCAACCACAACTGATGGTCCATTAAGTACAGATTATAGCTTCCGTTCATTTACATCA
CCACTTCGAAACACATCGGGAAATACATCACCAACACAGAGTGTTTCTAGTGTCTCTAAA
ACAGCAGCTGGAACAAAAATTATTCCCGAAATAAATGATCGTGTTATTGTCAAGAGTGCA
ACTGGAAGTCGTGCTGGAATTCTTCGTTATCGTGGAGAGCCAGCATTTGCTAGTGGTATT
TGGTGTGGTGTTGAATATGAAGAGCCTGTTGGCAAAAATGACGGATCAGTTAGTGGACAA
AGATATTTCAAATGCGCACCCAATCATGGAATTTTTGTGCCTGAAGGAAAGGTTGTTTTA
TCACCATTAGCACGAAAAATGCGCCTTTCAAGACAAAATTCACAAGAATCGTTAACATCA
AACATTACACTTAACAGCTTGGCTTCGACAAATACTTCAAAATTGCGGTTAAATGCAACA
CAAAAGCGCCTATCGACACTTAATAAGTCACCATCGGCAACGTCAACACCAAAACCCTCG
TTCTCGTTGCAGGACATTTTACGAGAGAAATCGAATCATATTGAACAAATCATGAAAGAA
CGAGATATTGAACGTGAAGAAATGGCAGCTCAAACAGTTCTTTATCAAAAGAATCTTAAT
CAGTATAAAGAAAAGTTGACTCATCTTCAAAAGCTTCTTGAAGACGAACGAAAGAAAAGT
GAAGATCTTCAATTTACTATAGATGAGGCACAAACAAACGCTGATGAAAATGAGTCGAAA
AACACGACTGAACTCACACTTCGCGAGAAAATTAAACAATTAGAGCAAATTTTGAAGCAG
CAAACAAAGCAAGGTGCAGGTGATTTCGTTATCGACACTTCACAGAATGATGAACTTATT
TCAAAACTTCGGATTGAAGTTGATGAACTCAAACAAAAATTACATAATGCAGAATCACTC
AAATCGACATTGGAGAATCAAATACAGTCGTTGAATGAGAAAATTACTGATTATAGTAAT
GAGTTGGAGCTCAAATCTTCTGCCAATGATGCAATTGAAAAGGTTTTCAAAGAAGAAATT
GATTATCTTCAAGGTCGAATCAATGAATTAGAAAAGGAAGTGTCTGACAAATCATCACAA
TTGGAGAATGATAAAGAAAATTTATCTAAAATCGAGTGCTCTTATAATGAAAAATTATCA
TTACTTCAAAAAGAAATAGAAGAAAAAATAAATAATGAAAATTTACATGCCAGTGAATTA
GATGCAAAAAATAAAGAAATTGACTCGCTCAAGTCTGATATTGAAAAGCTCACTAGTTCT
GACCTTGGTGCACAAGAAGTCATAGGTAAAAAAGAAATTGAGATTCAAAAACTGACTGAA
ACTTTGCAAACAAAAGAATTCTCTATTATTGAACTGTCAAGTGAATTAGGAAAAAAGATT
GATGAAGTTACTGCACGCGATAATGAGATTGAAAATTTACAAAAATCTCTAAAAATACTT
GAAAATGAGAAAGAAAATAACAAATCCAATTGTGAACAATATTTAAAAGATATTCAAAAA
GGACTTGAAGAAATTTCACATTACAAGACTCAAATAGATACACAAGTTTCAGAAATTTCA
TCACTTAAATCTGAATTGCAACGTATGGAAAAGATTGTTAATGATTTAAATGAAAATATT
CTAAAACATCAAGCCAATGAAGAAGTTTTAACATCCAAAGTAACTGACTTGTCTGAATCT
AAAGTAAAACTCGAAAATGATCTCATTTCAAAAGACAAAGAGATTGCAGATGCATTAGAG
ACTAAACAGAAATTGATTCATGAGCTTGAAGAAGTCAAAAAATGTATGAGCGGTCTCGAT
GCAGAAGCACAAGGAAATATTAGTCTCTTGAATGAAAAAGACTCTTTGATTAAGAACTTA
ACAAAAGACTTGAATGACTTGAAAGAAACGAGTCAGCAAGAAGTTAAACAACTTTTGATC
GAAAAAAGTTCTCTTGAAACCAAATTTGAAGAAAGTCAAAAGCTTTTTAATGAACAGATT
ACAAAAGAGAAAGTAGAACATGATGCTGAAAAGGATAAATTGAAAACTACAATTGATGAG
TTTGAGAAAATAATCAAAGAGAAAGATGCTCGTATGGAAGTTATGGATAAAAATTCACAA
TTATTGGAAGAAACAAAAGAAAAATTAGAGAAATCTTTGACTGATTATGAAAGTAAACTT
AATGAGAATTTGACAAAATTAGGTAAATTAGAAAAAGAGCATACCGATACATTATTGCAA
TTCAATAAACTACAATCTCAATATAACGAAACTTCACAAAAGCTTCAAGAATTCGAAATA
ACAACTAAAAAGCTTCAAGATGACAAGAGCGCATTAGATATTGATAACAAAGATTTGAAT
CGCAAACTTGGAGCACAAGATGAGAAAATCACACAATTGTCAGAGCAGAAATTAAAACTT
CAAGAGGAACTTGATTCATATAAAACTTCATCACTCGATGCAAATAGTGAACTTAAGAAA
CTACATGACAGTTTGAAGGAGAAACAATTAGCTTTTGAAAACTATCAAGCAAATGCTGAT
AAAAACAATATCGAATTACAACGTCGAATTGATGAACTTGAAAATCAACGTGACACTGCC
AATCAAATGTGTACAAAATTAAAGAGTGAATTAGATACTCTCAATCAACAGAAAATTGAA
AATGAAAATATTCTCAATACTGATTTACAAAATATTAAAGCTAGCACTGAAGAAGAGAGA
GCTAATTTAGTAAGTGAAATAAATAATTTAAGAGCTTCTTTTGAAAATGAGAGAACAGAA
TTGAAAAAATGTAATAATGAGCTAGCAGAAGTGTCTGAAAAATGCAAAAATGAGCTTGAG
GCTAAAATTAAAAGTCTTAATGAAATTCTTGAAGATTTACGTAAAGAATTAGATGGTGCA
CGTGCAGAAACTAAAAATTCAGAGTCACGTTTTGGTTCTGCTATTGATGAGTTGAAATCA
AAAGAATCTCAACTCATTGAAGAACTATCAAAAGAACGTGATGAAAGTGATAAGCATAAA
GCGAAAATTGAAGAATTACAAGCAGCTAAAGATATTCAAAAGAATGAATATGAGGAAAAA
TTGTCAATTGAAAAGGCAAAGATAAAGAAACTCGAAGAAGAGCTTTTTGTTCAAATTGAA
CAACATAAATTAGCTTCGGCAGGTAATGAAGAGAAAGTGAAAATTCTTGACGATTTTCAA
GCGAAATGTTTTGCACATGAACAAAAGATATCTGATTTGAGCAATCAAATTCAAAATGAA
ATTTCATCAAAAGCCAAATTAGAAGATAGCTTAAAAGAGCTTCATCAGAAGCTTCGTGAA
ATTGAAGAAGAACAAGTTGATTTGGTTAGCAAAAAAGAAGAATATAAGGCAAAAACAATT
GAACAGCAAGAGATGATAAATGAATTGATGCAAAGAAGAAAAAGTCTTGATGAAAAACTT
TTACTTGAAAAGAAAGATTCAGAGTTATTTAAATCTGAATCCGATATCAAAATTAAAGAA
ATGCAGCAAAAATTAAATGAACTCAATCAAATGGTCGCCAAAAAAGACTTTGAAAAAGAA
GAAATATTAACTAGTTTAAAGCTTCGTGATGAAAAGCTAAGTCAATTATATGATTCTATA
AAGCAACAAGATAGAAAATTGCAAGATGAAATCGATAGCATACAAAAAGAGATGAAATCA
AAGGATGATGAAATAATTAAAATGGCTAATGAAAACAATGTAAAAGATGATTTGCTCAAT
GATTTACGCAATACTGTTGAAAATCTTAAAACGTGCCTTAATACAATGAATGACGAAAAA
ACTTTTAGTAAAGATGCAGTTGAAGAGCTCAATCAAAATATTCATTCACGTGATGAAAAG
ATCAATGAATTATCATTAGAAATTCACTCTTTAAAATCTAATCTCAAGGAAAAGGATGAT
CAACTCAAAAATGTCTATGCTATAAAAAGCAAAGTTGAATCAGAGTCAAGACAACGCATT
GATGATTTAATGGAGCAGCTAAATATTTTAGAAGAAGTCAAAACTAAAGAATTTTCTGAA
ATAAATGAAAAGCTTTCTCAACTGACGACACAAGTTAGTATATATCAGACCGAATCAGAG
TCTTCATGTGTTAGCGAAAAAGATATTGAAAACATGCGTCAAGAATATCTTATGAAAATT
AGAGATTTGGAAATGTCTGAGACTGAGCTTCAAATTACAAATCAAGCATTAAAACGACAA
TTGGAAGAAATTCAAAGCACTACATCGCTTGTTCCAAAAATGGAAGGAGGTGATCAAGAT
TTGGTTGAACATATCGAATTTTTGAACTCAATCATAGCAGATATGCATAAGAAAAATTTG
AAATTGACGAAGCAAGTCCAATCGATGGAAGTTGGTTCATCAAAATCAAATACTTCATTT
AAAGAGAACGATTTCGATATGAAATTCTTGGAAAAGAAGCAATTACCACCACCTCGAATG
TATTGCGATATCTGTGAAGTTTTTGATGCTCACGAGACAGAAGACTGTCCAACACAATGC
TCATCAATTGACCTTGATGCACCGGCTGTCAAGCGAGAAGAAAAGAAGGAGCGCAAGAAG
CCACCGCCAAGGAAATATTGCGATTTTTGTGAAATATTCGATGCTCATGAAACTGAAGAA
TGCCCAAACAACGATGAAACATTTTAA
>g5009.t1 Gene=g5009 Length=1828
MSESNEEQKSIPPSSEEYAASLILKSSKPSGIKPPSTASLFSSDSSAHRVSRICSSHQKK
PDLPTAATPNKISVAFVVKHENTTLSGELSNNDYGDTMRRQSDDYKTHYLPDVSEESEYD
LLYDRFGLGYRSSKSKSQSPDPFRLYKYSPDRKSSSGISSSVSPDFFEATGRRSSSDHGA
DLTTDTDSFMIGNRVYVGGVKPGRITFIGEVHFAPGEWAGVVLDEPEGKNDGAVSGKRYF
QCEPKKGIFSRLTRLTREPLSSTTTDGPLSTDYSFRSFTSPLRNTSGNTSPTQSVSSVSK
TAAGTKIIPEINDRVIVKSATGSRAGILRYRGEPAFASGIWCGVEYEEPVGKNDGSVSGQ
RYFKCAPNHGIFVPEGKVVLSPLARKMRLSRQNSQESLTSNITLNSLASTNTSKLRLNAT
QKRLSTLNKSPSATSTPKPSFSLQDILREKSNHIEQIMKERDIEREEMAAQTVLYQKNLN
QYKEKLTHLQKLLEDERKKSEDLQFTIDEAQTNADENESKNTTELTLREKIKQLEQILKQ
QTKQGAGDFVIDTSQNDELISKLRIEVDELKQKLHNAESLKSTLENQIQSLNEKITDYSN
ELELKSSANDAIEKVFKEEIDYLQGRINELEKEVSDKSSQLENDKENLSKIECSYNEKLS
LLQKEIEEKINNENLHASELDAKNKEIDSLKSDIEKLTSSDLGAQEVIGKKEIEIQKLTE
TLQTKEFSIIELSSELGKKIDEVTARDNEIENLQKSLKILENEKENNKSNCEQYLKDIQK
GLEEISHYKTQIDTQVSEISSLKSELQRMEKIVNDLNENILKHQANEEVLTSKVTDLSES
KVKLENDLISKDKEIADALETKQKLIHELEEVKKCMSGLDAEAQGNISLLNEKDSLIKNL
TKDLNDLKETSQQEVKQLLIEKSSLETKFEESQKLFNEQITKEKVEHDAEKDKLKTTIDE
FEKIIKEKDARMEVMDKNSQLLEETKEKLEKSLTDYESKLNENLTKLGKLEKEHTDTLLQ
FNKLQSQYNETSQKLQEFEITTKKLQDDKSALDIDNKDLNRKLGAQDEKITQLSEQKLKL
QEELDSYKTSSLDANSELKKLHDSLKEKQLAFENYQANADKNNIELQRRIDELENQRDTA
NQMCTKLKSELDTLNQQKIENENILNTDLQNIKASTEEERANLVSEINNLRASFENERTE
LKKCNNELAEVSEKCKNELEAKIKSLNEILEDLRKELDGARAETKNSESRFGSAIDELKS
KESQLIEELSKERDESDKHKAKIEELQAAKDIQKNEYEEKLSIEKAKIKKLEEELFVQIE
QHKLASAGNEEKVKILDDFQAKCFAHEQKISDLSNQIQNEISSKAKLEDSLKELHQKLRE
IEEEQVDLVSKKEEYKAKTIEQQEMINELMQRRKSLDEKLLLEKKDSELFKSESDIKIKE
MQQKLNELNQMVAKKDFEKEEILTSLKLRDEKLSQLYDSIKQQDRKLQDEIDSIQKEMKS
KDDEIIKMANENNVKDDLLNDLRNTVENLKTCLNTMNDEKTFSKDAVEELNQNIHSRDEK
INELSLEIHSLKSNLKEKDDQLKNVYAIKSKVESESRQRIDDLMEQLNILEEVKTKEFSE
INEKLSQLTTQVSIYQTESESSCVSEKDIENMRQEYLMKIRDLEMSETELQITNQALKRQ
LEEIQSTTSLVPKMEGGDQDLVEHIEFLNSIIADMHKKNLKLTKQVQSMEVGSSKSNTSF
KENDFDMKFLEKKQLPPPRMYCDICEVFDAHETEDCPTQCSSIDLDAPAVKREEKKERKK
PPPRKYCDFCEIFDAHETEECPNNDETF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 29 | g5009.t1 | Coils | Coil | Coil | 447 | 467 | - |
| 23 | g5009.t1 | Coils | Coil | Coil | 479 | 513 | - |
| 25 | g5009.t1 | Coils | Coil | Coil | 524 | 544 | - |
| 14 | g5009.t1 | Coils | Coil | Coil | 560 | 608 | - |
| 31 | g5009.t1 | Coils | Coil | Coil | 613 | 647 | - |
| 30 | g5009.t1 | Coils | Coil | Coil | 680 | 700 | - |
| 24 | g5009.t1 | Coils | Coil | Coil | 743 | 777 | - |
| 26 | g5009.t1 | Coils | Coil | Coil | 792 | 826 | - |
| 28 | g5009.t1 | Coils | Coil | Coil | 890 | 935 | - |
| 27 | g5009.t1 | Coils | Coil | Coil | 937 | 1013 | - |
| 18 | g5009.t1 | Coils | Coil | Coil | 1021 | 1090 | - |
| 17 | g5009.t1 | Coils | Coil | Coil | 1098 | 1157 | - |
| 22 | g5009.t1 | Coils | Coil | Coil | 1166 | 1250 | - |
| 19 | g5009.t1 | Coils | Coil | Coil | 1255 | 1314 | - |
| 20 | g5009.t1 | Coils | Coil | Coil | 1336 | 1426 | - |
| 32 | g5009.t1 | Coils | Coil | Coil | 1431 | 1461 | - |
| 15 | g5009.t1 | Coils | Coil | Coil | 1477 | 1511 | - |
| 33 | g5009.t1 | Coils | Coil | Coil | 1519 | 1581 | - |
| 16 | g5009.t1 | Coils | Coil | Coil | 1593 | 1613 | - |
| 21 | g5009.t1 | Coils | Coil | Coil | 1660 | 1687 | - |
| 13 | g5009.t1 | Gene3D | G3DSA:2.30.30.190 | - | 173 | 266 | 2.2E-30 |
| 12 | g5009.t1 | Gene3D | G3DSA:2.30.30.190 | - | 285 | 385 | 8.2E-27 |
| 39 | g5009.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 45 | - |
| 38 | g5009.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - |
| 6 | g5009.t1 | PANTHER | PTHR18916:SF79 | RESTIN HOMOLOG | 155 | 642 | 2.5E-92 |
| 8 | g5009.t1 | PANTHER | PTHR18916 | DYNACTIN 1-RELATED MICROTUBULE-BINDING | 155 | 642 | 2.5E-92 |
| 5 | g5009.t1 | PANTHER | PTHR18916:SF79 | RESTIN HOMOLOG | 1758 | 1828 | 2.5E-92 |
| 7 | g5009.t1 | PANTHER | PTHR18916 | DYNACTIN 1-RELATED MICROTUBULE-BINDING | 1758 | 1828 | 2.5E-92 |
| 3 | g5009.t1 | Pfam | PF01302 | CAP-Gly domain | 191 | 254 | 5.1E-21 |
| 4 | g5009.t1 | Pfam | PF01302 | CAP-Gly domain | 311 | 378 | 1.8E-22 |
| 1 | g5009.t1 | Pfam | PF16641 | CLIP1 zinc knuckle | 1759 | 1776 | 9.6E-8 |
| 2 | g5009.t1 | Pfam | PF16641 | CLIP1 zinc knuckle | 1804 | 1821 | 3.5E-5 |
| 34 | g5009.t1 | ProSitePatterns | PS00845 | CAP-Gly domain signature. | 209 | 240 | - |
| 35 | g5009.t1 | ProSitePatterns | PS00845 | CAP-Gly domain signature. | 332 | 363 | - |
| 40 | g5009.t1 | ProSiteProfiles | PS50245 | CAP-Gly domain profile. | 209 | 251 | 17.73 |
| 41 | g5009.t1 | ProSiteProfiles | PS50245 | CAP-Gly domain profile. | 332 | 374 | 18.036 |
| 37 | g5009.t1 | SMART | SM01052 | CAP_GLY_2 | 191 | 256 | 1.4E-28 |
| 36 | g5009.t1 | SMART | SM01052 | CAP_GLY_2 | 311 | 379 | 4.4E-31 |
| 10 | g5009.t1 | SUPERFAMILY | SSF74924 | Cap-Gly domain | 172 | 273 | 1.02E-31 |
| 11 | g5009.t1 | SUPERFAMILY | SSF74924 | Cap-Gly domain | 310 | 392 | 2.62E-28 |
| 9 | g5009.t1 | SUPERFAMILY | SSF90257 | Myosin rod fragments | 982 | 1093 | 2.01E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5009/g5009.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5009.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10421 (CAP-Gly domain-containing linker protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
