General information for g5015.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5015 is located on chr_2: 6469830..6470734 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5015 | g5015.t5 | isoform | g5015.t5 | 6469830 | 6470734 |
| chr_2 | g5015 | g5015.t5 | exon | g5015.t5.exon1 | 6469830 | 6470154 |
| chr_2 | g5015 | g5015.t5 | cds | g5015.t5.CDS1 | 6469831 | 6470154 |
| chr_2 | g5015 | g5015.t5 | exon | g5015.t5.exon2 | 6470278 | 6470734 |
| chr_2 | g5015 | g5015.t5 | cds | g5015.t5.CDS2 | 6470278 | 6470337 |
| chr_2 | g5015 | g5015.t5 | TSS | g5015.t5 | 6470866 | 6470866 |
| chr_2 | g5015 | g5015.t5 | TTS | g5015.t5 | NA | NA |
Sequences
>g5015.t5 Gene=g5015 Length=782
ATGGTGGGTTTTAATTAGAATAATTTCATTTTTTAAAACATTTTCTATACAAAAATTTAG
TAAAAAAATGACTGTTCATCAGTGATTAGACGTCAAATTAATTTATTTCTAATTGATAAG
ATTGTGTGTTTCTCAATTGCCTCCTCATAAAATTTTTACAATGATAGCGACAATTTAAGA
TTAACGAAAAATTATCCAACTGTAATTTCAGCTAAAGCTTTTGATTGTTTTATTGGTTTA
TGTGACTGCGAGTGATGCACGAACAATAAAAAATTTGGCAGATGGTGGTCGATCAGTTTG
GTTTAATGAAACAATTCCAAGTAGTTCTTTTGGAGCAAGTGGTTTTGGTGGCACGTGGAT
TTCGGGAAATGAATTTACATACAGTTCAAATAGGAACATGATTAAGCATAATATTATTAC
GAGAGTGAATGAAACATTACTTGATAGCACTTTTTCGGCAAGATGGAGTGGAGCATCATT
AACATTATCTCCAGGAAGAACAAAAGTTTTAGTTCGATATGCACAACGATCAATTTTTAG
ACATAGCACAGTTGCAAAGTTTTCAGTGGTTTTTATGGACAATTTAGAAGTTGAATATAA
GATTAGTGATGGTGATGAGATTCAATTATGCAAATTTTCACCAAATGATGATGGACTTAT
TTATATTAAACAAAATACAATTTATCATGCTACTGATGAACAAATTAAGGCAGGAAGATA
TTCAGTACAGTCACCACCCGGAGAAGATGGAGTTTTATATTTTGGAATTCCAGATTGGGT
TT
>g5015.t5 Gene=g5015 Length=128
MIKHNIITRVNETLLDSTFSARWSGASLTLSPGRTKVLVRYAQRSIFRHSTVAKFSVVFM
DNLEVEYKISDGDEIQLCKFSPNDDGLIYIKQNTIYHATDEQIKAGRYSVQSPPGEDGVL
YFGIPDWV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g5015.t5 | Gene3D | G3DSA:2.140.10.30 | - | 1 | 128 | 0e+00 |
| 2 | g5015.t5 | PANTHER | PTHR11731 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED | 2 | 128 | 0e+00 |
| 3 | g5015.t5 | PANTHER | PTHR11731:SF154 | VENOM DIPEPTIDYL PEPTIDASE 4-LIKE PROTEIN | 2 | 128 | 0e+00 |
| 1 | g5015.t5 | Pfam | PF00930 | Dipeptidyl peptidase IV (DPP IV) N-terminal region | 31 | 128 | 0e+00 |
| 4 | g5015.t5 | SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 24 | 128 | 6e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5015/g5015.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5015.t5.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
