General information for g5032.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inosine triphosphate pyrophosphatase.
Parent gene
- The parent gene g5032 is located on chr_2: 6539746..6540490 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5032 | g5032.t2 | TTS | g5032.t2 | 6539674 | 6539674 |
| chr_2 | g5032 | g5032.t2 | isoform | g5032.t2 | 6539746 | 6540490 |
| chr_2 | g5032 | g5032.t2 | exon | g5032.t2.exon1 | 6539746 | 6539921 |
| chr_2 | g5032 | g5032.t2 | cds | g5032.t2.CDS1 | 6539746 | 6539921 |
| chr_2 | g5032 | g5032.t2 | exon | g5032.t2.exon2 | 6539978 | 6540117 |
| chr_2 | g5032 | g5032.t2 | cds | g5032.t2.CDS2 | 6539978 | 6540117 |
| chr_2 | g5032 | g5032.t2 | exon | g5032.t2.exon3 | 6540174 | 6540490 |
| chr_2 | g5032 | g5032.t2 | cds | g5032.t2.CDS3 | 6540174 | 6540490 |
| chr_2 | g5032 | g5032.t2 | TSS | g5032.t2 | 6540564 | 6540564 |
Sequences
>g5032.t2 Gene=g5032 Length=633
ATGTCAAGAACGCTAACATTTGTAACAGGAAATGCAAAGAAACTTGAAGAAATTAAAGCT
ATACTCGGACAAAGATTTCCATTGAAGATTGAGAGTCAAAAAATAGATTTGCCTGAACTT
CAAGGTGATAAACAACAAATTGTTTTACATGAAGTAGTAAATTTTATTCTTTTATCACGA
TATTTAGGTGAAATTGATGAAATATCAATTGAAAAAGCAAAAGAAGCAGCAAAATATGTA
AAAGGGCCAGTTGTTGTAGAGGACACAAGTTTATGTTTCAATGCTCTAAATTCACTTCCC
GGTCCTTACATTAAATGGTTCTTAGATAAGTTAGGACCAGAAAAATTACCAAAATTGCTT
GATGGATTTGAAGATAAATCAGCACAAGCAATTTGTACATTAGCTTTTGCAAGAGATGAA
AATTCTGAAGTAATTTTATTTAAAGGAATTACTGATGGTATTATTGTTGCACCACGTGGA
CCTCGTGATTTTGGCTGGGATCCTATATTTCAACCGATTGGATATGATCAAACTTATGCA
GAACTTCCAAAAGAAACTAAGAATGAAATTTCCCATCGATATCGAGCTCTTGATAAATTA
CGAGACTATTTTACAAATTCTAATGAACTTTGA
>g5032.t2 Gene=g5032 Length=210
MSRTLTFVTGNAKKLEEIKAILGQRFPLKIESQKIDLPELQGDKQQIVLHEVVNFILLSR
YLGEIDEISIEKAKEAAKYVKGPVVVEDTSLCFNALNSLPGPYIKWFLDKLGPEKLPKLL
DGFEDKSAQAICTLAFARDENSEVILFKGITDGIIVAPRGPRDFGWDPIFQPIGYDQTYA
ELPKETKNEISHRYRALDKLRDYFTNSNEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g5032.t2 | CDD | cd00515 | HAM1 | 5 | 203 | 0.00000 |
| 5 | g5032.t2 | Gene3D | G3DSA:3.90.950.10 | - | 1 | 208 | 0.00000 |
| 3 | g5032.t2 | Hamap | MF_03148 | Inosine triphosphate pyrophosphatase [ITPA]. | 3 | 206 | 58.73779 |
| 2 | g5032.t2 | PANTHER | PTHR11067 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN | 5 | 208 | 0.00000 |
| 1 | g5032.t2 | Pfam | PF01725 | Ham1 family | 5 | 202 | 0.00000 |
| 4 | g5032.t2 | SUPERFAMILY | SSF52972 | ITPase-like | 3 | 206 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5032/g5032.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5032.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047429 | nucleoside-triphosphate diphosphatase activity | MF |
| GO:0009143 | nucleoside triphosphate catabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01519 (inosine triphosphate pyrophosphatase [EC:3.6.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
