General information for g5193.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable beta-hexosaminidase fdl.
Parent gene
- The parent gene g5193 is located on chr_2: 7604723..7605657 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5193 | g5193.t2 | isoform | g5193.t2 | 7602597 | 7605657 |
| chr_2 | g5193 | g5193.t2 | exon | g5193.t2.exon1 | 7602597 | 7602847 |
| chr_2 | g5193 | g5193.t2 | exon | g5193.t2.exon2 | 7604289 | 7605565 |
| chr_2 | g5193 | g5193.t2 | cds | g5193.t2.CDS1 | 7604379 | 7604723 |
| chr_2 | g5193 | g5193.t2 | exon | g5193.t2.exon3 | 7605640 | 7605657 |
| chr_2 | g5193 | g5193.t2 | TSS | g5193.t2 | NA | NA |
| chr_2 | g5193 | g5193.t2 | TTS | g5193.t2 | NA | NA |
Sequences
>g5193.t2 Gene=g5193 Length=1546
TTTGGTGTTCTAATTAGAAATACACAAAAGTAAATTTATTACAATATTATCATCACAAAT
GTTTTTTTTTCTATTCCACTCTCACAATAATCTAGAGTTTAAGTGCATGAAATTGTATCG
CGTGTCTATATGTACTATGTGTGTGACGTAAAATTTCATAAACGCCTGGTCTGGCTGGCG
TTTGTTTTTTAGCATTTTCACTTTCTTGATAGAAACGTTTAATTGCCTTTCGTTTGTGCA
CCAAAGCGGTTTTACCTAAAGAACGTTATATCATTCAAACTTGGATTCCAAATAATTCTG
ATATTCCTCAAAAGTTGTTAGATAAAGGCTATCGACTCATAATGACTACAAAAAATGCTT
GGTATTTTGACCATGGTTTTTGGGGCAATACAAAATATTATAATTGGAAAACAGTTTATG
CAAATACTCTTCCACGAAATGAGTTGGTTTTAGGTGGTGAAGTTTGCATGTGGTCAGAAT
ATTTGGATGAACATTCAATTGAAATGAAAATTTTTCCACGTCTTAATGCTGCTGCAGAAC
GTTTGTGGGCAAATCCAAAAACTGATCTTAATGCTGTAGAATCCAGATTTTATCGTCAAC
GTGAGAGAATCGTTGCAAAAGGAATTCAAGCTGATGCTATTTTAACTGAATATTGTACAT
TGTTTGAAGGTGAATGCCGTGGTTAATGTGTGAAAAATGAACACATTTATTTATTTTAAT
AATTTACATTACAATTAATTAAGTTGCACATTTAATAAAAGCATCAGTATTAGATAAATT
TGCACACTTATTTGCTCTTTTGGCTCTCTGCTGCATTCCAGTAAATTTCAGGTAATGTGC
TCTTTGCAAATGGCCATAAAATGCATGACAGCCAATTGTCGCCAAAAACAATCTTCAAAT
TTTTATTAAGGCCGAGATCATATGCGCCTTTGTTTTTCTCATGTGCTGTTGCATTTTTAA
CTATAAGACGTCCATGATAAACCATCAAAACTCCAGTAAAAATTGCTCCAATTAAGATCA
GCATGTATAATAAAAGATGAATTTCATTTGATGTATTAAACATGAACATAAACATAGGAA
AAATCATTTTCAAAGGTGTAATCCATTGAAGAAAAAGTGAACCATTAACAATCCACAAAT
AGTATGAATTATAAAAGAATGCATAAGTTGTTCCAATAAAGAAGTAAAGTAAAAACACCA
AAAAATGTCGATGATTATTATAGCCAATACAATTTCCAGCAAACATACAGTGATGATCAC
GTTTTAGAATGCAGACATTACATGTATCACAATGCCAGCTTCGAGGCGGTACAATTATTT
CGCATTTTTCACACAAACTCCAATCTTTTGCTGATGGATCATTTTTGAAGCGAGTTGTTG
TCATTGTTTCAGGAGAAGCAAAAACACTTGTGTCTATTAAAATTATGTGCATCAAATTTG
CGATTATGTTAAATACGATGAATGTACCAAGTATATAGTTGACTAGCAGAATAATTGAAA
ATCCATGAATGTGATAAAGAACATACTAGAAGTTCATAGTAAAACA
>g5193.t2 Gene=g5193 Length=114
MTTKNAWYFDHGFWGNTKYYNWKTVYANTLPRNELVLGGEVCMWSEYLDEHSIEMKIFPR
LNAAAERLWANPKTDLNAVESRFYRQRERIVAKGIQADAILTEYCTLFEGECRG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g5193.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 114 | 0e+00 |
| 2 | g5193.t2 | PANTHER | PTHR22600 | BETA-HEXOSAMINIDASE | 2 | 112 | 0e+00 |
| 3 | g5193.t2 | PANTHER | PTHR22600:SF42 | BETA-HEXOSAMINIDASE | 2 | 112 | 0e+00 |
| 5 | g5193.t2 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 36 | 52 | 8e-07 |
| 4 | g5193.t2 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 53 | 70 | 8e-07 |
| 1 | g5193.t2 | Pfam | PF00728 | Glycosyl hydrolase family 20, catalytic domain | 13 | 71 | 0e+00 |
| 6 | g5193.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 5 | 106 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5193/g5193.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5193.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004563 | beta-N-acetylhexosaminidase activity | MF |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
