General information for g5193.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chitooligosaccharidolytic beta-N-acetylglucosaminidase.
Parent gene
- The parent gene g5193 is located on chr_2: 7604723..7605657 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5193 | g5193.t3 | isoform | g5193.t3 | 7603757 | 7605657 |
| chr_2 | g5193 | g5193.t3 | exon | g5193.t3.exon1 | 7603757 | 7605562 |
| chr_2 | g5193 | g5193.t3 | cds | g5193.t3.CDS1 | 7604064 | 7604723 |
| chr_2 | g5193 | g5193.t3 | exon | g5193.t3.exon2 | 7605638 | 7605657 |
| chr_2 | g5193 | g5193.t3 | TSS | g5193.t3 | NA | NA |
| chr_2 | g5193 | g5193.t3 | TTS | g5193.t3 | NA | NA |
Sequences
>g5193.t3 Gene=g5193 Length=1826
TGCATTTTCTAAAGATAAAGTTTATTTTAAATCTGATATTGATAAAATTGTTCAATATGC
AAAATATCGTGGTATTCGAGTGATTTTTGAGCTTGATGCGCCTGCTCATGCGGGAAAAGG
TTGGGAATGGGGTGAAAAATCTGGCTTAGGAAAACTTGCAGTTTGTGTTGATGATCAGCC
ATGGAGAAAATCGTGCATTCAACCAAATTGTGGACAATTAAATCCATCAAATGAAAACCT
TTATTCAGTATTGCATGACATTTATCAAGATATTCGTGATTATAAAGAGAAAAATGAATT
TATACACATGGGTGGCGATGAAGTCTTTGTCAAGTGTTGGAATAATACAAAAGAAATCAC
AGACTATATGGCAACAAAAAATTATGATCGCAATAATGTCATTGGCTTTTTACAGTTATG
GTCTGAATTTCAAGGAAAAGCTTTAAATATTTGGGATAACATCACAGATGAAAAAGAATC
AATTGTAATGTGGTCAAGTGAATTGACACTGCCTGAAAATATTGAAAAATTCTTACCTAA
AGAACGTTATATCATTCAAACTTGGATTCCAAATAATTCTGATATTCCTCAAAAGTTGTT
AGATAAAGGCTATCGACTCATAATGACTACAAAAAATGCTTGGTATTTTGACCATGGTTT
TTGGGGCAATACAAAATATTATAATTGGAAAACAGTTTATGCAAATACTCTTCCACGAAA
TGAGTTGGTTTTAGGTGGTGAAGTTTGCATGTGGTCAGAATATTTGGATGAACATTCAAT
TGAAATGAAAATTTTTCCACGTCTTAATGCTGCTGCAGAACGTTTGTGGGCAAATCCAAA
AACTGATCTTAATGCTGTAGAATCCAGATTTTATCGTCAACGTGAGAGAATCGTTGCAAA
AGGAATTCAAGCTGATGCTATTTTAACTGAATATTGTACATTGTTTGAAGGTGAATGCCG
TGGTTAATGTGTGAAAAATGAACACATTTATTTATTTTAATAATTTACATTACAATTAAT
TAAGTTGCACATTTAATAAAAGCATCAGTATTAGATAAATTTGCACACTTATTTGCTCTT
TTGGCTCTCTGCTGCATTCCAGTAAATTTCAGGTAATGTGCTCTTTGCAAATGGCCATAA
AATGCATGACAGCCAATTGTCGCCAAAAACAATCTTCAAATTTTTATTAAGGCCGAGATC
ATATGCGCCTTTGTTTTTCTCATGTGCTGTTGCATTTTTAACTATAAGACGTCCATGATA
AACCATCAAAACTCCAGTAAAAATTGCTCCAATTAAGATCAGCATGTATAATAAAAGATG
AATTTCATTTGATGTATTAAACATGAACATAAACATAGGAAAAATCATTTTCAAAGGTGT
AATCCATTGAAGAAAAAGTGAACCATTAACAATCCACAAATAGTATGAATTATAAAAGAA
TGCATAAGTTGTTCCAATAAAGAAGTAAAGTAAAAACACCAAAAAATGTCGATGATTATT
ATAGCCAATACAATTTCCAGCAAACATACAGTGATGATCACGTTTTAGAATGCAGACATT
ACATGTATCACAATGCCAGCTTCGAGGCGGTACAATTATTTCGCATTTTTCACACAAACT
CCAATCTTTTGCTGATGGATCATTTTTGAAGCGAGTTGTTGTCATTGTTTCAGGAGAAGC
AAAAACACTTGTGTCTATTAAAATTATGTGCATCAAATTTGCGATTATGTTAAATACGAT
GAATGTACCAAGTATATAGTTGACTAGCAGAATAATTGAAAATCCATGAATGTGATAAAG
AACATAATGAAGTTCATAGTAAAACA
>g5193.t3 Gene=g5193 Length=219
MGGDEVFVKCWNNTKEITDYMATKNYDRNNVIGFLQLWSEFQGKALNIWDNITDEKESIV
MWSSELTLPENIEKFLPKERYIIQTWIPNNSDIPQKLLDKGYRLIMTTKNAWYFDHGFWG
NTKYYNWKTVYANTLPRNELVLGGEVCMWSEYLDEHSIEMKIFPRLNAAAERLWANPKTD
LNAVESRFYRQRERIVAKGIQADAILTEYCTLFEGECRG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g5193.t3 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 219 | 0e+00 |
| 2 | g5193.t3 | PANTHER | PTHR22600 | BETA-HEXOSAMINIDASE | 1 | 217 | 0e+00 |
| 3 | g5193.t3 | PANTHER | PTHR22600:SF42 | BETA-HEXOSAMINIDASE | 1 | 217 | 0e+00 |
| 4 | g5193.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 141 | 157 | 2e-06 |
| 5 | g5193.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 158 | 175 | 2e-06 |
| 1 | g5193.t3 | Pfam | PF00728 | Glycosyl hydrolase family 20, catalytic domain | 1 | 176 | 0e+00 |
| 6 | g5193.t3 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 178 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5193/g5193.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5193.t3.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004563 | beta-N-acetylhexosaminidase activity | MF |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
