General information for g5339.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cadherin-related tumor suppressor.
Parent gene
- The parent gene g5339 is located on chr_2: 9015043..9015996 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5339 | g5339.t1 | isoform | g5339.t1 | 8916931 | 9015043 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon1 | 8916931 | 8917680 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS1 | 8916931 | 8917680 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon2 | 8917756 | 8922249 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS2 | 8917756 | 8922249 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon3 | 8980308 | 8980616 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS3 | 8980308 | 8980616 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon4 | 8984619 | 8984852 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS4 | 8984619 | 8984852 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon5 | 8986270 | 8986471 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS5 | 8986270 | 8986471 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon6 | 8990163 | 8990347 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS6 | 8990163 | 8990347 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon7 | 8991506 | 8991852 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS7 | 8991506 | 8991852 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon8 | 8991908 | 8991980 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS8 | 8991908 | 8991980 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon9 | 8992042 | 8992552 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS9 | 8992042 | 8992552 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon10 | 9005097 | 9010020 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS10 | 9005097 | 9010020 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon11 | 9010081 | 9010527 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS11 | 9010081 | 9010527 |
| chr_2 | g5339 | g5339.t1 | exon | g5339.t1.exon12 | 9012370 | 9015043 |
| chr_2 | g5339 | g5339.t1 | cds | g5339.t1.CDS12 | 9012370 | 9015043 |
| chr_2 | g5339 | g5339.t1 | TSS | g5339.t1 | NA | NA |
| chr_2 | g5339 | g5339.t1 | TTS | g5339.t1 | NA | NA |
Sequences
>g5339.t1 Gene=g5339 Length=15150
ATGAGATTAAGAAAGGCTTTATGGCTACTTTTTGTAGTCGCTATGCATCTGCTAGCATGT
GGTGCACACAATTCTGGCCCTGGTCCAGGCATTTTTCCACGAAGACGTTCATCAAATGAT
GGCATAATGCAATCACGTGCAGTCGATACGCGAGTTCAATTTGAAATTCTTGAAGGTGAA
CCGCGTGGAACAATTGTTGGCTATATTCCTACAAAACCAGGCTTTACATATCGCTTCAAT
GAGCCACCACGTGAATTCACACTTGATTCAGTGACTGGTGAAATTAAAACAAATGCAGTT
TTAGATCGTGAAGCAATTACAAATGATCGATATGATTTGGTGATTTTGAGCAGTCAACCA
ACTTATCCAATTGAAGTACGGATTATCGTACAAGATATTAATGACAATGCACCAGAATTT
CCTGAACCAAGCATTGCAGTTTCATTTTCTGAAAGTGCTGCACAAGGTACAAGATTATTA
TTGGATGCAGCAACTGATAGAGACAGTGGAACAAACAAAGTCACTGACGATTATCGAATT
GTTGACGGCAATCATGATGACAAATTTCGATTGGCTGTTACGACTAATCCTAGTGGCGAC
GTGTCATATTTACATTTGGAAACGACTGGCAAGCTTGATCGAGAGACAAGAGGATCATAT
GTACTCAATATTTCAGCACGCGATGGTGGAAGTCCACCAAAGAATGGCTATTTACAAGTT
AATGTCACAATTCTTGATGTTAATGATAACCCACCAATATTCGATCACAGCGACTACATT
GTATCATTAAATGAAAGTGTTGTTCCTGGTACACCAGTTTTACAAGTAATGGCATCAGAC
AATGATTTGGGAGACAACAGTAAAATTACTTACTATCTCTCTGACACAGAGACACAATTC
ACAGTTGATCCAGAAACGGGAGTAATTACAACTACAGAATTACTCTCATGTCCACAACAA
AATTGTCCAACATTCACAACTAAGCCTGGTTCATGCCCAAAGAGTTGTGTATTCACTGTG
TTTGCACGCGATCATGGTTCGCCTCGACAAGACGGTCGTACTTATGTTACAGTGAATTTA
GTCGACACCAATGATCATGCACCACAGATTAGATTTCAATACTTTCCGCCCACTGGAACT
TACGCGACTGTCGATGAAAATGCCGTAAATGGATCTGTTGTTGCGGCTGTTTCTGTCGAG
GACATGGACGAAGGACTCAATGGTGAAACTAGTCTGAAAATTATCTCTGGCAATGATCTT
GGCCATTTTCGACTAGACAAAACACCAAGTTTTGATATTGTTAGAGTCAATGGTGTACTC
GATCGAGAAGAAATTGGCAAATATAATTTAACGGTTGTGGCCAGTGATAAAGGTACACCA
TCTAGAACAGCAACTGCATATTTAATTATTCATGTTAACGATGTCAATGACCATGAACCT
GTTTTTGAAAAATCAGAATACTCGGCCATTTTAAGTGAATTAGCACCATCGGGCACATTT
GTGGCAAGCATAACAGCCACTGATGAAGACACAGGAGTAAATGCACAAATTTACTATGAC
TTTGTATCAGGAAATAATAAACAATGGTTCTCAATTGATTCAGTGTCTGGTTTAATTACA
ACGAAAGCGCCACTTGATAGAGAAGTACAAGGATCAATTGAATTAAGCATTTCGGCACGT
GATGGTGGTCCAAATCCAAAATGGGCTTATACACATCTCAAGGTCACAATATTAGATGAA
AATGATGAAAAACCTAAATTTTCACAGCCACACATCAACATTAGTCTCAGTGAGAGCACA
CAACCTCACACATTGGTTGCAATGCTCACTGCATCAGATCTTGATCAAGGCACAAATGGC
AGTGTCTCATATTCCCTACATTCAAGTGTTGAACAAAATTATCCAAACATGTTTACCCTA
GACTCACTTACCGGTCAGCTAACAATCAAAAGTAAGCTCGATCGTGAAACAATCGCAGAC
TATGAGATTCGAGTAATTGCAAAAGATCAAGGTCTCCCACAGCAATCATCTACCGCAACT
GTATTTCTTCATGTCGATGATATCAATGATAATTCACCCGAGTTCTATCCCAAGCGCTAT
TTTGTGGCTTTATCTGATGATACAGCTATTGGCACATCGATAATTAAAGTTCATGCAACA
GATAGAGATGATGGTGATAATGCAATAATCACATACAAATTAGAAAGCGGTGGTGATGGC
TTTTTTGTCGTTGATAATTGGACTGGTGTTATGAGTCTTAGGTCAAGTTTGAGATCATCA
CAAAAATCATTGTTTAAATTAACCGTCTCGGCGAAAGATCGAGGTGATCGTCGTACAGAA
CGCGATGCCATTGTAGAAATAGTGAGAGAATCAAAACTTGAAGAATTGGAATTTGATGCG
CATGGCAACTATGAGTTTTCAATTTATGAGGATTTCGGCAGTGAAAATTCAAAAATTGGT
CGTGAAGTTGGAAAGACAAAAGTCACAACGTCATCGTCTGCGGTTGAATATGCAATTGTC
TACGGTGATCCAAATGGAAATTTCAAAATTGATGAGCAAACAGGTATTATCGTCACAGCA
AAACCAATCGACCGAGAAGAATCAATGATATACACATTAACTGTAGTGGCAAGAGCAGAA
CTTGCTTACGGAAATGTCTCTGTAATCATAAATATTCTCGATTTGAATGATAATGCGCCA
ATTTTCACACGTGACAAAGATGAAATTTATATACCTGAGAATGCGGCAGTTGGAAAAGAA
ATTTATCTCGCACGTGCACGAGACAAAGATGCTGGAATAAATTCGCGAATAACTTATAGT
TTGACTTATAATCCACAAGAGCAATTTAGAATTTCCGAGTCATCGGGCGTGCTCTATCTT
AATCGTCCAATTAGAGTTGATCCAGGAACTGTTATGCATCTTGAAATAACAGCCATGGAT
GGTGGAGAACCGCACTTGATGTCAAAGAATAATGTCATAATTACAATTGAAGATGTTAAT
GACCATACATGTGTCTTTGATCATACATCTTATGAGACTTCATTGCTCGAATCAACTCAT
GTCAACACAAGATTCTTTGCATTGTCAGCATCTGATGCAGACCTTGGCGCTAATGGTCGA
ATTTCATATAAAATTGTTGATGGCAATTCAGAAAATAAATTTGGCATTTTCCCAGATGGA
TATCTGTTTGTTAAAAGTCGATTAGATCGTGAGGAACGAGACTATTATTCACTAACAATC
AGCTGCAGTGATGGTGGAAATCCACAACGTTCAACTGAAGTTCCCGTTGTAATTCATGTA
ATTGATGTGAATGACAATGCACCGCAATTTACAAATGCCACATTCACTTTCAATATTGCC
GAGAATGAGCCAGTTGATTCTTTTGTTGGTAAATTAACAGCAACCGATCGTGACATAGGT
CGTAATGCAGAGCTGATATTTATGCTGTCAAATGTACAAAATGATTTTATGGTTGATCCA
CGCAATGGATTTATCAAGACACTTCATGAATTTGATCGTGAAGCTTTAGTGCAGCAAACT
GGTCAAAATTTTATTACACTTGAAGCAACAGTAACTGACAATGGTGCAGTAAGGCTAAAG
GACAAAGTTAAAGTGAAAATCTTCATAAATGACGTCAATGATCATGCACCACAATTCTTA
AGAGCTCCATACAAAGTTCAAGTTTCTGAGGGTTCAACAATTGGCTCACAATTAATTCGT
GTTTATACTTTTGATGCTGATGAAGGCTTAAATGGTGATGTATTTTATCAAATTTCTGAT
GGTAATGATGGTGGTAAATTTGCAATTGATGAATCAACAGGACAATTGACATTAGTAAAA
TCACTTGATAGAGAAACAATGTCAATTTATAAGTTGACAATTGTCGCACATGATGCTGCT
AAAATTGATCGCTTAAGTTCATCAACAACAATTACAATTGAAGTACTCGATGAAAATGAT
TGTAGTCCTGAATTTGTACAGACCGATACAAATATTAAAGTGATTGAAACAACGCCTGTG
GGCACAGAATTGATTAAATTTCGTGCTACAGATTCCGATTTAGGAATAAATAGTCAGCTG
ACTTATTCAATTGCAGCAGGAAATCGTCGTGATACCTTTCACATTGATCCAATATCTGGT
TCTTTATATTTGCATAAGCTATTGGACTATGAAGATACACAGTCATATTCATTAAATATC
ACTGCTTCAGATGGTGGCAATCCAAGGCTATCAACAACCATCATGTTTGTCGTCACCGTT
TTTGATTATAATGATAATGCACCGACATTTCCCAACACGGCAATTGTACGACAAATACGC
GAAGGTATTCCAATTAATACGCCAATTGTCACAATCACAGCCGAAGATCCAGACTCAGGC
TTAAATGGAAAAGTCACATATGCAATACAAAGTCAAGATCCAACATTTGGTCAACGACAT
TTTGGTATTAATGCGACGTCTGGTGTAATTTTTACAATGCGTCAAATCGATCGTGAATCT
GTCGATACTTTCAGACTTATTGTTGTTGCGACTGATCAAGCTGAAGTGCCATCACAAAGG
CTCTCAGCTGAAAAACTCGTTACAGTTATTGTCGAGGATATAAATGATTGTGAACCAATT
TTTGTGTCAATGAATGCAGCCGTTCTGCCGCTCAAAGATATTCGCGTTGAACCGGGTCGC
GATGGTTATCCTATAATGAATGTTTTCGCACGTGACGCTGACTCGAGTTCTAATGGACTT
GTGACCTACGAAATGGTCAGTGGTAATAGTGATTTATTTAAATTGCATCGTAGCACTGGT
GTGATTTCGCTTAAAAAGACAATAAACAATAATCCCGAAGCGCGTTATCAATTAGCAGTC
AAAGCGACTGATGAAGCAGTGCAAAGTGAAAGAAAATCAAGTGATGCTTATATTACAATT
ATTTCGAGTAGTTCTGCAAGTGGTGGTCCAGTGTTTGAACAAAAAGATTTATCGGGAAGT
GTTTTTGAAAATGAGCCGGCAGGTACGAGCATTCTTACAGTATCTGCACATTTAAGTTCA
AATGGTGCAGGTCAAGAAATTGAATATTATGTGACAAATGTAACAGGCAATGGTAAACAA
GTGGATCGTCTTTTTGATATCGATACTAAGCTCGGTATCCTTTCCACTGCCATTGAATTA
GATCGCGAAAATGGAATTGAAACTTATGTCATTGAAGTCTACGCAATTGTCATCGGTGGA
ATACCACGTACATCAAGCACAAAGGTCAAAGTAACAGTGCTGGATAAAAATGACGAGAGT
CCGACCTTTCGTGACTTACCATTGAGCTATATGGTATCAGAAGATCTCGGCAATGGTCAA
ATTATTGCGACGATAAAAGCAACAGACCCGGATACGATAGGAAAATTGGAGTACTCATTA
ATTTCAGGCGATGATGGTAAATTTACATTGGATAAACATCAAGGAGTTTTAAAATTGCGA
GATACACTGGATCGCGAAACAAAAGATTTATATAAGCTTGTTATTCGTGTAACTGACAGT
GTCCAATATACAGAAACTACAATATCAATACAGGTCACTGATAGCAACGATAACCCGCCC
GTCTTCACAGAGCCAGCCTATTCGTTTGACATTCCAGAAAATGCACCACGTGGATATCAA
GTCGGTCTCATTTCTGCAACTGATGCTGACTTGGGTGCTAATTCAATGCTCACATATACC
GTCATTAGTGATTGGGCAAACGATGTCTTTTCATTAAACCCACAAACTGGCGTCTTTACA
TTGACAGCACGTTTAGATTATGAAGAGGTACAGCACTACATTCTAGTCGTACAGGCACAA
GATAACGGACATCCAAGTCTATCGAGTACGCTGACAGTTTATTGCAATGTGATCGATTTG
AACGATAACGCGCCCGTCTTTGATCCAATGAGTTATTCAAATGAAATTTATGAGAATGTT
CCAATCGGCACGGAGGTTGTCACAGTTAGTGCTACTGATATCGATTCTGGCGATAACGGT
CGAATAGAGTACAGCATAACCGCAGGCAATGATGATGACTTTGAAATTGTTTCCAATGGA
ACCATCTATACAAAACGAATGCTGGACCGCGAAACCAAGAGCACATACAATTTGGTGGTT
ACTGCTCGTGATTGCGCTAAGGATGTTGACAAACGACTTTCGTCAACTGTACAAGTCACA
GTCATCCTCAAAGATGTAAACGATGTAAAGCCCGTGTTTATAACACCAAATGAGACGAGT
GTTAGCGAAAACATTCCAATCAATACTGTCATGATGGCGATTAAAGCCATTGATCGTGAT
GAAGGTCGCAATGGATATGTTGAATATATGCTGGAAACAAATTCATCATCCATACCGTTC
ACACTTGGTTCAGTTGATGGCTTGCTGCGGGTTTCAGGTCGTTTAGATCGCGAAATAAAG
GCCAATTATGAACTGACCGTAACGGCAAGGGATCGAGGTGAACCACCAAAATCAACGCAA
TCAAAAATTCTTGTAAAAGTATTGGATGAAAATGATAATAGCCCTGTATTTGATCCCAAA
CATTATAGCGCATCAATAGCTGAAAATGCCAGCATTGGAGCGAGTGTTTTGCAAGTATCA
GCAACTGACATCGATGAGGGTGCAAACGGTCGAGTTCGTTTTTCAATCGCGAGTGGTGAC
GATAATCGTGATTTTAGTATTAGCGAAGACACGGGTGTTGTAAGAGTCGCGAAAAATTTA
AATTACGAGCGAAAATCGCGCTATGTGCTAACTGTACGTGCCGAAGATTGTGCTAGTGAT
GTTGGCAGCGGAGAGACGCGTTTTGATACTGCCGAATTGATAATAACAATCACCGATATA
AACGACTGCTTTCCAACATTCCTTGATTCACCCTATCTTGCTTATGTAATGGAGAACGTG
ATACCAAATGGCGGCTATGTGATTTCAGTAAAAGCATATGATGCCGATACACCGCCGTTC
AACAACCAAGTACGATACTTTTTGAAAGAAGGCGATGCTGATCTTTTCAGAATCAACGCA
TCAACTGGCGAGATTTCCTTGTTACGTGCATTGGATCGAGAGCAACAAGCCGAATATACG
TTGACTCTTGTTGCTATGGATACCGGTTCACCACCTCTAACAGGAACTGGAACTGTACGA
GTCATTGTGCAAGACATGAATGACCATAGTCCGGAATTTGAACGCCAATCATATCGTGCA
ACGGTTTCTGAGAATCTACCGGCAGGCACAAAAGTTTTAACGCCTATTGCACGTGACAAA
GATGCAGGACTTAATGCAAAAATCCGCTTTAGTCTATTAGGTGATAAAGTTGAACGTTTT
CATATTAATCACGATACTGGTGAAATTACAACTGCTATAATGCTAGATCGTGAAGATACT
GCAGTTTATCATTTTACACTTATGGCACAAGATTCATCAGCAACAGAACCACGTGCTGCT
GCTGTGAATTTCACGATAACAGTTGATGACATGAATGACAACACACCATCATTTGAGCAA
GCTGCATTCACTGTCAACATTCCCGATCGCATCAAAACAGGCCAGTTTGTGTTCGGCGCC
AAAGCAACCGATCTCGATGATGGCATTAACAGTAAAATTTTATACTCCATTGGTGGAAAA
GACGCAAGTAAATTCAACATAAATATAAACACGGGAGTTATAAAAGCAGCTGAAGAATTG
TCACTCATCGGACATAGCAATGACAGAATATTCAATATTGACATCAATGCAATCGATCAA
GGTCACGAACCAAAATCAGCAAAATGTGAATTAACGATTGAATTGAGACCAGCTCATCTT
TTTCCAACATTCTCTTATTCATCTGAAACGCAATTTATTCTTTCTGAAGATGTTCCAGAA
GGAAAACTTGTGACAAAAATTCAAGCATCATCACCTAAGAAGGGATCAATTGGAAATATT
AAATATGCAATTGCAGGCGGAAATATAAACAATGCTTTAAAAATTGATCGTACAAATGGT
GATGTAACAATTGGACCAGGCAGATTAGATTATGAAATATCACAGCAATACGAAGTGTGG
ATTGAAGCTTCAGATTCTGACAATCCAAGTCTAAGAAGTGTAATGAAACTTACAATCAAT
GTGACTGACGCAAATGATAATGGTCCAATTATGGAGAAAATGATTTACTCTGCTGAAGTG
CTGGAAGAAGAGCCACCGCCTCAAATGGTTGCAAGAATACGTGCTACTGATGCTGATAGT
GATGAAAATGGACAAGTCTCATATCGTTTAGTTAATGACTTTGAAAGTGCATTTGAAATT
GATTCTGACACGGGAGAAATTTTCACCAATTTAAGACTTGATCGTGAAGATATTGCGAGT
TATGAGTTGACAGTTGAAGCAGTCGATCAGGGAATGCCACAAATGACGGGAAGTGCAACA
GTGTTAATCACAGTGCTGGATAAAAACGATAATCCGCCACGATTCACACGACTCTTTAGT
GTCAATGTGACAGAAAATGCAGAAATTGGATCTTTTGTGATTAAAGTCACATCATCTGAC
TTGGACATCAATGAGAATGCCAATGCAACTTATAATTTTACTGAGAATCCAGGCAATAAA
TTCGCTATTGATCCTATTAGTGGTAATGTGACAGTCGCTGGACGCTTAGACCGAGAACAG
CAAGATGAATATTTATTGAAAGTTGTTGCAGTTGATGGAGCATGGAGACAGGAAACTCCA
TTAACAATCACAATTCAAGATTTAAACGATAATGCACCTGAATTTGAGCATAGTTATTAT
AGTTTCAATTTGCCAGAACTTCAAAAGAATGTAGCATTTGTTGGACAAGTTACAGCAACA
GATCGTGACAAACAAGGGCCTAATTCAATCATTTCTTATTCACTACAACATCCAAGTGAT
TTATTTACAATCGATCCAGCATCAGGTGAAATATTCAGTAAACGAACTATTCATTACAAG
CATTCACAAATGGAATCATCGCCTGAAAATATGTATGCAATGACTGTGCTTGCTACTGAC
AATGGTAAACCACCAATGTATTCTGAATGTCTCGTAAACATCAATATTGTCGATGCCAAT
AACAATCCACCGAAATTCGAGAAACGTGACTATCTCTCACCTGTCCCAGAAGATGCAAAA
GAAGGCCAACGAGTTGTGCAAGTGGTCGCAAAAGATACACTCGATTTTGGAGTGAATGCA
GAGATTGAATATGTGATAACAGGTGGTAATGGCAGTAATAATTTCGTCATTAACAAAAAT
GATGGATGGATAAGTGTTAATAAACCATTAAATGTGGGTCCAAGTTCTGTTTATCAGCTT
TCAATAAGAGCAGTTGATAAAGGCGTGCCGCCACAATATGATGACGTTACTGTGACAATT
GTTGTTGCTGGTGAAAATCGCTTCTCACCTGTTTTTACTGCACTCAGTTATCAAGTGATT
GTTCCTGAAAATGAACCGATTGGATCAACAATTTTAGTTGTGTCTGCTTCAGATAATGAT
GATGGTCCAAATGGCATGATAAGATATACAATTTCTGGTGGAAATGAAAGAAAAGAATTT
GCTGTTGATCCACTTTCAGGAAGTGTAACAATTCTTCAATCACTTGATTATGATATAATT
CAAGAATATCATTTGAATATCACAGCCAGAGATCTTGGATTTAAACCACGAAGTGTTGTT
GCTATGTTAAGAGTAACTTTGACAGACATCAATGATCAAAAACCAGAATTCAATCAGACT
GAATATCATGCTTATATTCCTGAAAATTCACCTGCAAAATCATTTGTCTATAAAGCACAA
GCAACAGATAAAGACTCACCAAAAAATGCCATAATTCAGTACACAATCACAAGTGGTTCA
GGAAAAGAATTTTTCACAATAGATCCACAAACTGGTGTTATTTATTCAAAAGTTACATTC
GATTATGAAGAACAAAATCAATATCAAATTATTATCACTGCATCAAATCCTGATTCAACA
ATGTTTAGCACAACAAAAGTGACAATTCACATTACTGGTGTCAATGAATTTTATCCACGT
TTTGTACAACCAGTCTTTCACTTTGATGTTTCAGAATCAGCTGAAGTGGGCACAAGCATT
GGCTCAATTCAAGCAACTGACAAAGATTCTGGTGATGATGGAAAAGTTTATTATTTATTA
GTCGGATCAAGCAATGATAAAGGCTTTAGTATAAATGCAGAAACTGGAATTATGTATGTT
TCACGAAATTTAGATCGAGAGACACAATCACGAGTTGTGCTGACTGTGATGGCAAAAAAT
TTTGGTGGAATTCGTGGAAATGATACAGATGAGGCTCAAGTAATAATTTCAATTCAAGAT
GGAAATGATCCACCTGAATTTCAGTTAAACCTTTATGAGGCTAATGTATCTGAAGATGCA
AATATTGGCACAAAAGTTGTCGCAGTTAAAGCAGTTGATAAAGATGTTAGACCACAAAAT
AATCAATTTAGTTATTCAATAATTGGTGGAAATGTTGATCAAGCATTTAAAATCGATCCA
CAAAGTGGTCAAGTTGAAACAGCAAGAAAATTAGATCGTGAAACGACACCAACTTATTCG
ATTATTGTTGGAGCTATTGATACAGGTATGCCACCACAAACAGGCACTACAATGGTAAAG
ATTAATCTATCTGATGTCAATGATAATGGTCCAACATTTGATGATAATAATCTTATTGGT
TATGTGTCAGAAAATGAACCAGTAGGTACGAGTGTTTTGACCTTATCAGCCAAAGATCCA
GATCTTCCACCTAATGGTGCGCCATTCACTTATTATCTCATTGGCGGTAAACATAAAGCT
CTTGTAAATATTGAAAAACACTCTGGTCTCATCAAAACAACACGATCAATTGACCGTGAA
GTAACACCTCAGTTGGAAATTATGATTGAAGTTGAAGATAATGGAAAACCTAAGATGCGC
TCACAACATAAAGTAATCATTAATGTTCTCGATCAAAATGATAGTCCATCAATGGCTCGT
GTTGCTCATGTCATGGTTTATACATTCAATGGTAAAATTCAAACTGGAAAAATTGCTGAT
GTTCATCCAAATGATCCTGACTCATCTGGCGATTATAAATGCAAACTCATAAGTGCTGTT
AAAGGTGGAGCACTTTCAATTCCAAATGCATGTGATTTGCATATCACGCCAAGTATTAAA
TATACTGGTTATTCACTTTCAATCTCAGGCAATGATGGAATTCATTCTGATGTGATTTCA
ACAATTTCAGTTGATTTTCTTAATTTTGATAACAATACTGTTGCTAATTCAATCACTATT
CGTGTAGAAAATATGACAGCTGCAAATTTTCTTGCCAATTTCTACAGAAGCTTTCAAGAC
ATTGTTAAAGCATCAATGGAGACAGGAGATGATATTTCAGTTTATAGCATTCGTGAAAAT
CAAGATGGTGTTGAAATAACAATTGCATCAAAATTCTCAGCTGGATATAGCTATCGATCA
CCAAGTTATATTGTTGAAAGAGTTCAAAAGAAACGAGAAGCTTTCGTTCAATTACTTCAA
AATCGCAATCTCATTATGCCATATTCACCATGCAATGCAAACAACACTTGTGCCAATGCT
GGCATTTGCTCGGAAAAAATCAATGTGCAAGACGAAGTGCGCATCATTGACAGTCAAAAT
CTTGTATTTACATCACCATTGGTATCGCATGATTTCAATTGTAAGTGTAGTGATGGTTTT
ACTGGCGAAAAATGTGATAAACGACAAGATCCGTGTGCACCAAATCCATGTCAAGCAGGT
GGTCAATGTAGAAGACAAGGTTATGATTTTCAATGTACATGTCCACCAAATCGTGAAGGT
AAATTGTGTCAATTAGAACGAGGTGATGCTTGCTCAAGTAATCCATGTAAATCTGGTGGC
TCATGTCGAGAAAGTCCTGATGGTTCATCATTCTTTTGCCTTTGTCGTCCTGGATATCGT
GGAAATCAGTGTGAAACTATTGCTGACTCATGTAGACCAAATCCATGTCTTTATGGTGGT
CTCTGTGTTAGCCTCAAACCAGGCTATAAATGTTCATGTACTGATGGTCGATATGGACGT
CATTGTGAGAGAGCAACATACGGATTCCAAGAGCTTTCATTTATGCAATTCCCGGCACTT
GATGCGGCAACAAATGATATTTCTATAGTTTTTGCCACAACAAAACCTGATGCACTGTTA
ATATATAATTATGGTGTACAGAGTGGAGGTCGATCAGATTTCGTCGCAATGGAAATTGTT
GGCGGTAAAGCAGTATTTTCATATGGCGGTGCACGAACAGCAATCACATCAATTGTTGTT
GGTGGTAGTAATGCAGCTGATTCATTATCAAATGGAAGATGGCACAAAGTAACAGCCACG
CGTAATGGTCGTGTGATGTCATTAAGTGTAGCTAAATGCACAGACAACGGTGATGTGTGC
GATGAATGTCGACCAGGCGATACAACTTGCTATTCCGATGAAGTCGGTCCAACTGGAACA
TTGAATTTCAATAAACATCCATTGCTGATTGGAGGTTTATCATCGGCAGATCCAATTTTA
GAAAGACCTGGGCAAATTCATTCGGATGATTTAATTGGATGTGTGCATAGTGTTTCGGTG
AATGGACGTGCATTAAATTTGAGCAATCCAATCAAGGCAACTGGTGTAACTTCAACATGC
AATCGAAACAATAATGGCGGACCATGTTCACAAGGACATCCTGACGATCCAGCATTATCA
CTCTGCGGAGCATTCGACGGATGCATGGATCGTTGGCATACAGCAATGTGCAAATGCGGT
GGCGATTTACTGTCACCTGATTGTTACACATCGATAGATCCAATTTCATTGGTCGATGGC
GGATTTATTGAATATAAAATCTCAGAAAAGCACAAGAGAATGCAATTACTGGAAAACATT
TACAGTGGCATGACCAACTGGAATCTCGATTTAGGTCGTCAAAAGAGATTTTCAATCAAG
ACTGACAACATCTCGAGTCTGGCACAAGTCGATGATCCACCGAAGTCAATGAGTGTGAAA
TTTCGAACTGTCAAATCGGACGGTCTTTTGATATATGCCGCTACGAATAAACACTACACC
TCTATTGAATTACGCGATGGTAAACTTGTGTATATCAGCAAGCAAAACACTCAAGTTAAC
ATGACATCATCAAGAGGTGCATATTTGTCAGATGGAAAGTGGCACAATTTGACACTCTTT
TCACACAATCGAATTGTTCAAATGTTGGTTGATGGAAAACTTTATGGCGAAGAATTGGAT
TCAACAGGTGTGCATGATTTTCTTGATCCCTATTTAACAGTTCTTTCTGTTGGTGGTGTA
AGACGTGAACTTGTATTTCCTCAAGATACAACAATTCCATCATTTGAAGGATGCATAGCA
AATTTCACAATCAATAATGAAATTCAACCATTTAATGGAAGTGGAAGTATTTATAAAGAA
GTATTACAACGAGGAAAAGTCTTTTTAGGATGTCATCCACTTACTGGTCTTGCTAGTGTT
CAAGTTACAGATCCATTATCAATCGGAATCACTTTGGTCATTGTTTTCTTTGTAATTCTT
CTCGTTGCCATTCTTGCATCATTTGTTGTATTTAGAATAAGAAAACAACAAAAAGAAAAA
CATGGTGCTGGTGCACTTCATAGTAAACAAAATGGAAATTCAACGTTATTAGGTGGAAGT
GGTTTGGTATCAGGAAGTGGGAATATGGATATGAGTCGTGGCATTCATGTTGGCGATTTA
TCAGGAGTTGGTTTTCATTCAGATGCATCACATGGTACACATCATCTTGTTGCAGCTGAA
CTTATATCGAAAAAATATAAAGAACGAGAAATTAATTCAGCTGAACCACAGAGACCTCAA
AGACCTGATATTATTGAAAGAGAAGTTGTAAGCAAAAGTCCACCACCATTGAGAGAAGTT
ATGTCAAATCATACACATGATCATTTAGCAAATATCGATAATGGATCAGAATTTCCTGAA
CATTATGATTTAGAAAATGCAAGTTCAATTGCACCATCTGATATTGATATTGTTTACCAT
TATAAAGGATATCGAGAAGCTGGTGGAGTAAGGCATCAAAAATATAATCAAAAATACAAA
GCAACACCACCACCAAATTCATATACTCATCATAAACATCAATCATCTGCAGCACAACAT
CATCGTCATTCGCCACATCATGTAGGTCCATATGCACCACGTGTGCCTCAAACTAGTCAA
CCACCAACTGCAACACCACGTCCTCCACATCAAAGCACACCATTAGCGAGACTTTCTCCA
AGTTCTGAAATGAGCTCACAACATCCACGTATATTAACTTTGCATGATATCTCAGGGAAG
CCATTGCAGAGTGCATTATTAGCAACAACATCATCATCGGGTGGTGTTGGAAAAGATGTT
CTTCATAGTAATAGTGAAAGAAGTCTAAATAGTCCAGTCATGTCACAATTGAGTGGTCAA
AGTTCAAGTACAAGTCGTAAAACACCTGGTATGCCACCAAAAACACCAAATGTCTCAAAT
GTTCCAATGGGTTTAACAGCAGAAGAAATTGAAAGACTCAATTCACGTCCTAGAACTTCA
TCTTTAGTATCTACATTAGATGCAGTTTCAAGTAGTAGTGAAGCACCTCGAGTACCTGGT
CAACATATGAATCACATGCATCATTCACCAGTTGTTGACAATCACAGCTCAACATCATCA
GATGAAAGTGGAAATGATAGCTTTACATGTTCTGAAATTGAATACGATAATAACAGTATC
AATGGTGATATAAGACCAAAAAGAGATGACGAAAGAAATGGAAATGAAAGTGGCAATGCA
AGCACATCAAGCAAACCACATATTCCGCCACCTTCTTATGATGGTTTTGATTCTTCCTTT
CGTGGCTCACTCAGCACACTTGTAGCATCAGATGATGACATTTCAACACATATGGTAGGC
GGAATGTATAGACAACCAAATGCAGCATCACCATCAGCAACTACTTTAGGCTGGGATTAT
TTATTAAATTGGGGTCCTAATTTTGAAAGTCTTATGGGAGTATTTAAAGACATTGCAGAA
TTACCTGATAATGTTAATGGTGCACGAGCCATACCAAGCTCATTGAGAATTCCAGCTAGT
GTACAAAATCCATCAGAAGAATATGTTTAA
>g5339.t1 Gene=g5339 Length=5049
MRLRKALWLLFVVAMHLLACGAHNSGPGPGIFPRRRSSNDGIMQSRAVDTRVQFEILEGE
PRGTIVGYIPTKPGFTYRFNEPPREFTLDSVTGEIKTNAVLDREAITNDRYDLVILSSQP
TYPIEVRIIVQDINDNAPEFPEPSIAVSFSESAAQGTRLLLDAATDRDSGTNKVTDDYRI
VDGNHDDKFRLAVTTNPSGDVSYLHLETTGKLDRETRGSYVLNISARDGGSPPKNGYLQV
NVTILDVNDNPPIFDHSDYIVSLNESVVPGTPVLQVMASDNDLGDNSKITYYLSDTETQF
TVDPETGVITTTELLSCPQQNCPTFTTKPGSCPKSCVFTVFARDHGSPRQDGRTYVTVNL
VDTNDHAPQIRFQYFPPTGTYATVDENAVNGSVVAAVSVEDMDEGLNGETSLKIISGNDL
GHFRLDKTPSFDIVRVNGVLDREEIGKYNLTVVASDKGTPSRTATAYLIIHVNDVNDHEP
VFEKSEYSAILSELAPSGTFVASITATDEDTGVNAQIYYDFVSGNNKQWFSIDSVSGLIT
TKAPLDREVQGSIELSISARDGGPNPKWAYTHLKVTILDENDEKPKFSQPHINISLSEST
QPHTLVAMLTASDLDQGTNGSVSYSLHSSVEQNYPNMFTLDSLTGQLTIKSKLDRETIAD
YEIRVIAKDQGLPQQSSTATVFLHVDDINDNSPEFYPKRYFVALSDDTAIGTSIIKVHAT
DRDDGDNAIITYKLESGGDGFFVVDNWTGVMSLRSSLRSSQKSLFKLTVSAKDRGDRRTE
RDAIVEIVRESKLEELEFDAHGNYEFSIYEDFGSENSKIGREVGKTKVTTSSSAVEYAIV
YGDPNGNFKIDEQTGIIVTAKPIDREESMIYTLTVVARAELAYGNVSVIINILDLNDNAP
IFTRDKDEIYIPENAAVGKEIYLARARDKDAGINSRITYSLTYNPQEQFRISESSGVLYL
NRPIRVDPGTVMHLEITAMDGGEPHLMSKNNVIITIEDVNDHTCVFDHTSYETSLLESTH
VNTRFFALSASDADLGANGRISYKIVDGNSENKFGIFPDGYLFVKSRLDREERDYYSLTI
SCSDGGNPQRSTEVPVVIHVIDVNDNAPQFTNATFTFNIAENEPVDSFVGKLTATDRDIG
RNAELIFMLSNVQNDFMVDPRNGFIKTLHEFDREALVQQTGQNFITLEATVTDNGAVRLK
DKVKVKIFINDVNDHAPQFLRAPYKVQVSEGSTIGSQLIRVYTFDADEGLNGDVFYQISD
GNDGGKFAIDESTGQLTLVKSLDRETMSIYKLTIVAHDAAKIDRLSSSTTITIEVLDEND
CSPEFVQTDTNIKVIETTPVGTELIKFRATDSDLGINSQLTYSIAAGNRRDTFHIDPISG
SLYLHKLLDYEDTQSYSLNITASDGGNPRLSTTIMFVVTVFDYNDNAPTFPNTAIVRQIR
EGIPINTPIVTITAEDPDSGLNGKVTYAIQSQDPTFGQRHFGINATSGVIFTMRQIDRES
VDTFRLIVVATDQAEVPSQRLSAEKLVTVIVEDINDCEPIFVSMNAAVLPLKDIRVEPGR
DGYPIMNVFARDADSSSNGLVTYEMVSGNSDLFKLHRSTGVISLKKTINNNPEARYQLAV
KATDEAVQSERKSSDAYITIISSSSASGGPVFEQKDLSGSVFENEPAGTSILTVSAHLSS
NGAGQEIEYYVTNVTGNGKQVDRLFDIDTKLGILSTAIELDRENGIETYVIEVYAIVIGG
IPRTSSTKVKVTVLDKNDESPTFRDLPLSYMVSEDLGNGQIIATIKATDPDTIGKLEYSL
ISGDDGKFTLDKHQGVLKLRDTLDRETKDLYKLVIRVTDSVQYTETTISIQVTDSNDNPP
VFTEPAYSFDIPENAPRGYQVGLISATDADLGANSMLTYTVISDWANDVFSLNPQTGVFT
LTARLDYEEVQHYILVVQAQDNGHPSLSSTLTVYCNVIDLNDNAPVFDPMSYSNEIYENV
PIGTEVVTVSATDIDSGDNGRIEYSITAGNDDDFEIVSNGTIYTKRMLDRETKSTYNLVV
TARDCAKDVDKRLSSTVQVTVILKDVNDVKPVFITPNETSVSENIPINTVMMAIKAIDRD
EGRNGYVEYMLETNSSSIPFTLGSVDGLLRVSGRLDREIKANYELTVTARDRGEPPKSTQ
SKILVKVLDENDNSPVFDPKHYSASIAENASIGASVLQVSATDIDEGANGRVRFSIASGD
DNRDFSISEDTGVVRVAKNLNYERKSRYVLTVRAEDCASDVGSGETRFDTAELIITITDI
NDCFPTFLDSPYLAYVMENVIPNGGYVISVKAYDADTPPFNNQVRYFLKEGDADLFRINA
STGEISLLRALDREQQAEYTLTLVAMDTGSPPLTGTGTVRVIVQDMNDHSPEFERQSYRA
TVSENLPAGTKVLTPIARDKDAGLNAKIRFSLLGDKVERFHINHDTGEITTAIMLDREDT
AVYHFTLMAQDSSATEPRAAAVNFTITVDDMNDNTPSFEQAAFTVNIPDRIKTGQFVFGA
KATDLDDGINSKILYSIGGKDASKFNININTGVIKAAEELSLIGHSNDRIFNIDINAIDQ
GHEPKSAKCELTIELRPAHLFPTFSYSSETQFILSEDVPEGKLVTKIQASSPKKGSIGNI
KYAIAGGNINNALKIDRTNGDVTIGPGRLDYEISQQYEVWIEASDSDNPSLRSVMKLTIN
VTDANDNGPIMEKMIYSAEVLEEEPPPQMVARIRATDADSDENGQVSYRLVNDFESAFEI
DSDTGEIFTNLRLDREDIASYELTVEAVDQGMPQMTGSATVLITVLDKNDNPPRFTRLFS
VNVTENAEIGSFVIKVTSSDLDINENANATYNFTENPGNKFAIDPISGNVTVAGRLDREQ
QDEYLLKVVAVDGAWRQETPLTITIQDLNDNAPEFEHSYYSFNLPELQKNVAFVGQVTAT
DRDKQGPNSIISYSLQHPSDLFTIDPASGEIFSKRTIHYKHSQMESSPENMYAMTVLATD
NGKPPMYSECLVNINIVDANNNPPKFEKRDYLSPVPEDAKEGQRVVQVVAKDTLDFGVNA
EIEYVITGGNGSNNFVINKNDGWISVNKPLNVGPSSVYQLSIRAVDKGVPPQYDDVTVTI
VVAGENRFSPVFTALSYQVIVPENEPIGSTILVVSASDNDDGPNGMIRYTISGGNERKEF
AVDPLSGSVTILQSLDYDIIQEYHLNITARDLGFKPRSVVAMLRVTLTDINDQKPEFNQT
EYHAYIPENSPAKSFVYKAQATDKDSPKNAIIQYTITSGSGKEFFTIDPQTGVIYSKVTF
DYEEQNQYQIIITASNPDSTMFSTTKVTIHITGVNEFYPRFVQPVFHFDVSESAEVGTSI
GSIQATDKDSGDDGKVYYLLVGSSNDKGFSINAETGIMYVSRNLDRETQSRVVLTVMAKN
FGGIRGNDTDEAQVIISIQDGNDPPEFQLNLYEANVSEDANIGTKVVAVKAVDKDVRPQN
NQFSYSIIGGNVDQAFKIDPQSGQVETARKLDRETTPTYSIIVGAIDTGMPPQTGTTMVK
INLSDVNDNGPTFDDNNLIGYVSENEPVGTSVLTLSAKDPDLPPNGAPFTYYLIGGKHKA
LVNIEKHSGLIKTTRSIDREVTPQLEIMIEVEDNGKPKMRSQHKVIINVLDQNDSPSMAR
VAHVMVYTFNGKIQTGKIADVHPNDPDSSGDYKCKLISAVKGGALSIPNACDLHITPSIK
YTGYSLSISGNDGIHSDVISTISVDFLNFDNNTVANSITIRVENMTAANFLANFYRSFQD
IVKASMETGDDISVYSIRENQDGVEITIASKFSAGYSYRSPSYIVERVQKKREAFVQLLQ
NRNLIMPYSPCNANNTCANAGICSEKINVQDEVRIIDSQNLVFTSPLVSHDFNCKCSDGF
TGEKCDKRQDPCAPNPCQAGGQCRRQGYDFQCTCPPNREGKLCQLERGDACSSNPCKSGG
SCRESPDGSSFFCLCRPGYRGNQCETIADSCRPNPCLYGGLCVSLKPGYKCSCTDGRYGR
HCERATYGFQELSFMQFPALDAATNDISIVFATTKPDALLIYNYGVQSGGRSDFVAMEIV
GGKAVFSYGGARTAITSIVVGGSNAADSLSNGRWHKVTATRNGRVMSLSVAKCTDNGDVC
DECRPGDTTCYSDEVGPTGTLNFNKHPLLIGGLSSADPILERPGQIHSDDLIGCVHSVSV
NGRALNLSNPIKATGVTSTCNRNNNGGPCSQGHPDDPALSLCGAFDGCMDRWHTAMCKCG
GDLLSPDCYTSIDPISLVDGGFIEYKISEKHKRMQLLENIYSGMTNWNLDLGRQKRFSIK
TDNISSLAQVDDPPKSMSVKFRTVKSDGLLIYAATNKHYTSIELRDGKLVYISKQNTQVN
MTSSRGAYLSDGKWHNLTLFSHNRIVQMLVDGKLYGEELDSTGVHDFLDPYLTVLSVGGV
RRELVFPQDTTIPSFEGCIANFTINNEIQPFNGSGSIYKEVLQRGKVFLGCHPLTGLASV
QVTDPLSIGITLVIVFFVILLVAILASFVVFRIRKQQKEKHGAGALHSKQNGNSTLLGGS
GLVSGSGNMDMSRGIHVGDLSGVGFHSDASHGTHHLVAAELISKKYKEREINSAEPQRPQ
RPDIIEREVVSKSPPPLREVMSNHTHDHLANIDNGSEFPEHYDLENASSIAPSDIDIVYH
YKGYREAGGVRHQKYNQKYKATPPPNSYTHHKHQSSAAQHHRHSPHHVGPYAPRVPQTSQ
PPTATPRPPHQSTPLARLSPSSEMSSQHPRILTLHDISGKPLQSALLATTSSSGGVGKDV
LHSNSERSLNSPVMSQLSGQSSSTSRKTPGMPPKTPNVSNVPMGLTAEEIERLNSRPRTS
SLVSTLDAVSSSSEAPRVPGQHMNHMHHSPVVDNHSSTSSDESGNDSFTCSEIEYDNNSI
NGDIRPKRDDERNGNESGNASTSSKPHIPPPSYDGFDSSFRGSLSTLVASDDDISTHMVG
GMYRQPNAASPSATTLGWDYLLNWGPNFESLMGVFKDIAELPDNVNGARAIPSSLRIPAS
VQNPSEEYV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 237 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 53 | 136 | 7.40721E-12 |
| 254 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 147 | 250 | 7.05454E-24 |
| 259 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 259 | 366 | 8.41494E-23 |
| 265 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 381 | 478 | 1.02782E-28 |
| 240 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 486 | 582 | 5.47433E-32 |
| 266 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 591 | 691 | 2.58947E-31 |
| 263 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 700 | 787 | 5.47421E-14 |
| 264 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 804 | 898 | 1.50269E-19 |
| 243 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 908 | 1002 | 2.21878E-24 |
| 258 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1010 | 1106 | 2.53966E-31 |
| 269 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1114 | 1215 | 4.10487E-22 |
| 242 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1223 | 1320 | 1.00939E-31 |
| 247 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1331 | 1426 | 4.00894E-31 |
| 249 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1438 | 1536 | 9.41781E-28 |
| 253 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1562 | 1629 | 1.10344E-13 |
| 252 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1658 | 1758 | 3.94761E-18 |
| 250 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1767 | 1858 | 1.70861E-23 |
| 255 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1867 | 1963 | 4.55627E-33 |
| 248 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 1971 | 2068 | 2.17413E-31 |
| 244 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2078 | 2173 | 7.67961E-29 |
| 238 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2181 | 2282 | 1.64044E-31 |
| 267 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2291 | 2389 | 8.89054E-31 |
| 236 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2397 | 2494 | 5.5203E-27 |
| 262 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2503 | 2595 | 5.36865E-14 |
| 251 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2611 | 2707 | 1.17113E-22 |
| 261 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2715 | 2811 | 2.31495E-35 |
| 260 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2819 | 2911 | 4.96296E-26 |
| 268 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 2920 | 3022 | 3.12657E-22 |
| 239 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3035 | 3126 | 6.0974E-24 |
| 241 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3136 | 3232 | 7.04686E-32 |
| 256 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3241 | 3336 | 1.65448E-28 |
| 246 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3345 | 3443 | 7.84232E-25 |
| 245 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3452 | 3549 | 6.52614E-33 |
| 257 | g5339.t1 | CDD | cd11304 | Cadherin_repeat | 3561 | 3654 | 1.00889E-25 |
| 235 | g5339.t1 | CDD | cd00054 | EGF_CA | 3910 | 3944 | 3.72501E-6 |
| 233 | g5339.t1 | CDD | cd00054 | EGF_CA | 3949 | 3985 | 2.88752E-9 |
| 234 | g5339.t1 | CDD | cd00054 | EGF_CA | 3989 | 4023 | 2.25578E-8 |
| 271 | g5339.t1 | CDD | cd00110 | LamG | 4026 | 4201 | 3.39617E-21 |
| 270 | g5339.t1 | CDD | cd00110 | LamG | 4336 | 4465 | 2.87894E-20 |
| 116 | g5339.t1 | Coils | Coil | Coil | 5049 | 5049 | - |
| 105 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 43 | 138 | 8.8E-11 |
| 97 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 139 | 249 | 1.2E-23 |
| 103 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 250 | 368 | 4.2E-25 |
| 91 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 369 | 477 | 1.5E-24 |
| 85 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 478 | 582 | 1.7E-30 |
| 95 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 583 | 689 | 4.3E-32 |
| 94 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 690 | 792 | 1.5E-22 |
| 109 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 804 | 900 | 3.2E-18 |
| 108 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 901 | 1002 | 1.4E-25 |
| 101 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1003 | 1105 | 1.7E-28 |
| 96 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1106 | 1214 | 2.0E-23 |
| 90 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1215 | 1320 | 3.2E-30 |
| 88 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1321 | 1425 | 1.7E-30 |
| 98 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1426 | 1537 | 5.1E-28 |
| 113 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1538 | 1645 | 3.9E-15 |
| 114 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1648 | 1758 | 4.2E-18 |
| 102 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1759 | 1857 | 6.0E-22 |
| 111 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1858 | 1962 | 1.1E-33 |
| 93 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1963 | 2070 | 5.7E-30 |
| 106 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2074 | 2174 | 9.5E-26 |
| 82 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2175 | 2282 | 4.1E-30 |
| 104 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2283 | 2388 | 1.7E-27 |
| 86 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2389 | 2493 | 4.2E-29 |
| 110 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2494 | 2596 | 7.9E-17 |
| 83 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2603 | 2709 | 3.4E-19 |
| 112 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2710 | 2812 | 2.6E-32 |
| 89 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2816 | 2913 | 1.5E-24 |
| 92 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2914 | 3020 | 1.6E-25 |
| 99 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3021 | 3123 | 1.1E-20 |
| 84 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3126 | 3232 | 3.9E-27 |
| 107 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3233 | 3336 | 3.3E-26 |
| 100 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3337 | 3443 | 8.0E-24 |
| 87 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3444 | 3548 | 3.2E-29 |
| 115 | g5339.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 3549 | 3658 | 6.8E-25 |
| 79 | g5339.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 3846 | 3909 | 9.2E-6 |
| 77 | g5339.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 3910 | 3947 | 9.6E-8 |
| 78 | g5339.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 3948 | 3989 | 1.5E-9 |
| 76 | g5339.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 3990 | 4028 | 3.2E-8 |
| 81 | g5339.t1 | Gene3D | G3DSA:2.60.120.200 | - | 4029 | 4221 | 8.3E-30 |
| 80 | g5339.t1 | Gene3D | G3DSA:2.60.120.200 | - | 4319 | 4475 | 3.3E-24 |
| 165 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4704 | 4769 | - |
| 168 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4714 | 4728 | - |
| 170 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4735 | 4749 | - |
| 164 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4750 | 4769 | - |
| 167 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4804 | 4879 | - |
| 169 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4804 | 4842 | - |
| 166 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4856 | 4878 | - |
| 163 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4911 | 4950 | - |
| 162 | g5339.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 4921 | 4935 | - |
| 216 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 45 | 352 | 0.0 |
| 223 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 45 | 352 | 0.0 |
| 215 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 353 | 457 | 0.0 |
| 222 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 353 | 457 | 0.0 |
| 214 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 460 | 2014 | 0.0 |
| 221 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 460 | 2014 | 0.0 |
| 217 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 2018 | 2115 | 0.0 |
| 224 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 2018 | 2115 | 0.0 |
| 211 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 2113 | 2263 | 0.0 |
| 218 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 2113 | 2263 | 0.0 |
| 213 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 2272 | 2372 | 0.0 |
| 220 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 2272 | 2372 | 0.0 |
| 212 | g5339.t1 | PANTHER | PTHR24025:SF19 | FAT ATYPICAL CADHERIN 4 | 2367 | 5036 | 0.0 |
| 219 | g5339.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 2367 | 5036 | 0.0 |
| 227 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 84 | 103 | 2.7E-29 |
| 225 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 254 | 283 | 2.7E-29 |
| 230 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 447 | 459 | 2.7E-29 |
| 231 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 461 | 480 | 2.7E-29 |
| 229 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 480 | 493 | 2.7E-29 |
| 226 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 853 | 879 | 2.7E-29 |
| 228 | g5339.t1 | PRINTS | PR00205 | Cadherin signature | 884 | 901 | 2.7E-29 |
| 16 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 146 | 245 | 1.0E-18 |
| 11 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 259 | 360 | 8.3E-20 |
| 22 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 382 | 472 | 1.3E-17 |
| 24 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 487 | 578 | 9.1E-23 |
| 27 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 593 | 685 | 6.4E-19 |
| 15 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 702 | 787 | 1.7E-12 |
| 28 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 814 | 892 | 3.0E-11 |
| 25 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 909 | 997 | 6.5E-14 |
| 14 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1011 | 1100 | 2.7E-19 |
| 20 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1115 | 1209 | 1.2E-9 |
| 12 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1224 | 1316 | 2.7E-22 |
| 35 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1331 | 1420 | 4.1E-21 |
| 9 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1438 | 1531 | 1.4E-18 |
| 23 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1560 | 1640 | 5.1E-12 |
| 29 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1658 | 1754 | 7.0E-11 |
| 8 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1772 | 1853 | 5.2E-14 |
| 10 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1867 | 1957 | 1.9E-22 |
| 30 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 1972 | 2062 | 3.0E-21 |
| 33 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2079 | 2168 | 3.0E-16 |
| 19 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2182 | 2278 | 6.8E-22 |
| 5 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2294 | 2384 | 7.8E-22 |
| 17 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2398 | 2488 | 3.2E-19 |
| 6 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2504 | 2595 | 3.9E-9 |
| 21 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2612 | 2702 | 2.0E-14 |
| 4 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2716 | 2806 | 2.0E-22 |
| 36 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2819 | 2906 | 3.5E-18 |
| 34 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 2920 | 3016 | 1.7E-17 |
| 32 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3034 | 3122 | 5.2E-16 |
| 13 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3137 | 3227 | 2.5E-21 |
| 18 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3242 | 3332 | 7.9E-20 |
| 7 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3346 | 3439 | 2.6E-18 |
| 26 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3452 | 3543 | 7.9E-25 |
| 31 | g5339.t1 | Pfam | PF00028 | Cadherin domain | 3562 | 3650 | 3.2E-16 |
| 1 | g5339.t1 | Pfam | PF00008 | EGF-like domain | 3951 | 3982 | 3.8E-5 |
| 3 | g5339.t1 | Pfam | PF00054 | Laminin G domain | 4051 | 4206 | 2.1E-23 |
| 2 | g5339.t1 | Pfam | PF02210 | Laminin G domain | 4341 | 4466 | 5.8E-17 |
| 274 | g5339.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 275 | g5339.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 276 | g5339.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
| 278 | g5339.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 21 | - |
| 273 | g5339.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 4505 | - |
| 277 | g5339.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 4506 | 4531 | - |
| 272 | g5339.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 4532 | 5049 | - |
| 295 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 242 | 252 | - |
| 293 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 470 | 480 | - |
| 290 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 683 | 693 | - |
| 289 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 890 | 900 | - |
| 297 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1098 | 1108 | - |
| 292 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1207 | 1217 | - |
| 298 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1418 | 1428 | - |
| 291 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2165 | 2175 | - |
| 287 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2381 | 2391 | - |
| 286 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2486 | 2496 | - |
| 294 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2803 | 2813 | - |
| 296 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2903 | 2913 | - |
| 288 | g5339.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 3541 | 3551 | - |
| 280 | g5339.t1 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 3894 | 3905 | - |
| 283 | g5339.t1 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 3894 | 3905 | - |
| 282 | g5339.t1 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 3932 | 3943 | - |
| 281 | g5339.t1 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 3973 | 3984 | - |
| 284 | g5339.t1 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 3973 | 3984 | - |
| 285 | g5339.t1 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 4011 | 4022 | - |
| 173 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 40 | 140 | 16.71 |
| 176 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 141 | 254 | 22.498 |
| 177 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 255 | 370 | 19.999 |
| 204 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 376 | 482 | 25.786 |
| 195 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 483 | 587 | 25.72 |
| 186 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 588 | 695 | 28.811 |
| 189 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 696 | 787 | 15.066 |
| 180 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 815 | 902 | 19.999 |
| 190 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 903 | 1006 | 19.407 |
| 179 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1007 | 1110 | 27.299 |
| 174 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1111 | 1219 | 22.015 |
| 197 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1220 | 1325 | 28.132 |
| 187 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1326 | 1430 | 27.518 |
| 202 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1431 | 1541 | 25.523 |
| 188 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1557 | 1652 | 17.784 |
| 178 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1653 | 1763 | 20.7 |
| 203 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1764 | 1862 | 25.567 |
| 199 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1863 | 1967 | 29.666 |
| 172 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1968 | 2073 | 27.101 |
| 193 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2073 | 2177 | 27.123 |
| 175 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2178 | 2287 | 27.847 |
| 181 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2288 | 2393 | 27.978 |
| 194 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2394 | 2498 | 26.663 |
| 185 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2499 | 2604 | 15.263 |
| 201 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2606 | 2711 | 19.319 |
| 198 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2712 | 2815 | 30.127 |
| 192 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2815 | 2915 | 25.83 |
| 171 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2916 | 3026 | 22.827 |
| 191 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3027 | 3132 | 20.174 |
| 200 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3133 | 3237 | 27.167 |
| 183 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3238 | 3341 | 24.032 |
| 184 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3342 | 3447 | 24.361 |
| 196 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3448 | 3553 | 30.171 |
| 182 | g5339.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 3562 | 3658 | 21.928 |
| 207 | g5339.t1 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 3847 | 3906 | 7.011 |
| 208 | g5339.t1 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 3908 | 3944 | 18.991 |
| 209 | g5339.t1 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 3947 | 3985 | 22.006 |
| 210 | g5339.t1 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 3987 | 4023 | 18.461 |
| 206 | g5339.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 4024 | 4220 | 28.413 |
| 205 | g5339.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 4314 | 4491 | 27.372 |
| 145 | g5339.t1 | SMART | SM00112 | CA_2 | 43 | 138 | 6.5E-9 |
| 136 | g5339.t1 | SMART | SM00112 | CA_2 | 162 | 252 | 3.0E-15 |
| 138 | g5339.t1 | SMART | SM00112 | CA_2 | 276 | 368 | 3.2E-16 |
| 124 | g5339.t1 | SMART | SM00112 | CA_2 | 397 | 480 | 6.3E-24 |
| 122 | g5339.t1 | SMART | SM00112 | CA_2 | 504 | 585 | 2.2E-27 |
| 130 | g5339.t1 | SMART | SM00112 | CA_2 | 609 | 693 | 3.8E-28 |
| 144 | g5339.t1 | SMART | SM00112 | CA_2 | 717 | 795 | 0.0091 |
| 147 | g5339.t1 | SMART | SM00112 | CA_2 | 823 | 900 | 4.1E-17 |
| 123 | g5339.t1 | SMART | SM00112 | CA_2 | 924 | 1004 | 1.0E-16 |
| 142 | g5339.t1 | SMART | SM00112 | CA_2 | 1028 | 1108 | 2.4E-28 |
| 154 | g5339.t1 | SMART | SM00112 | CA_2 | 1132 | 1217 | 1.9E-17 |
| 143 | g5339.t1 | SMART | SM00112 | CA_2 | 1241 | 1323 | 1.3E-25 |
| 146 | g5339.t1 | SMART | SM00112 | CA_2 | 1347 | 1428 | 2.1E-25 |
| 141 | g5339.t1 | SMART | SM00112 | CA_2 | 1452 | 1539 | 9.0E-26 |
| 153 | g5339.t1 | SMART | SM00112 | CA_2 | 1568 | 1650 | 1.2E-6 |
| 148 | g5339.t1 | SMART | SM00112 | CA_2 | 1674 | 1761 | 6.8E-13 |
| 134 | g5339.t1 | SMART | SM00112 | CA_2 | 1785 | 1860 | 4.5E-22 |
| 149 | g5339.t1 | SMART | SM00112 | CA_2 | 1884 | 1965 | 2.7E-28 |
| 155 | g5339.t1 | SMART | SM00112 | CA_2 | 1989 | 2071 | 4.4E-24 |
| 150 | g5339.t1 | SMART | SM00112 | CA_2 | 2094 | 2175 | 1.0E-24 |
| 151 | g5339.t1 | SMART | SM00112 | CA_2 | 2199 | 2285 | 1.2E-23 |
| 129 | g5339.t1 | SMART | SM00112 | CA_2 | 2310 | 2391 | 1.8E-30 |
| 152 | g5339.t1 | SMART | SM00112 | CA_2 | 2415 | 2496 | 5.7E-22 |
| 126 | g5339.t1 | SMART | SM00112 | CA_2 | 2520 | 2603 | 1.4E-5 |
| 137 | g5339.t1 | SMART | SM00112 | CA_2 | 2624 | 2709 | 2.6E-18 |
| 131 | g5339.t1 | SMART | SM00112 | CA_2 | 2733 | 2813 | 2.9E-33 |
| 125 | g5339.t1 | SMART | SM00112 | CA_2 | 2836 | 2913 | 8.7E-23 |
| 133 | g5339.t1 | SMART | SM00112 | CA_2 | 2937 | 3024 | 2.3E-20 |
| 140 | g5339.t1 | SMART | SM00112 | CA_2 | 3046 | 3130 | 4.2E-15 |
| 135 | g5339.t1 | SMART | SM00112 | CA_2 | 3154 | 3235 | 2.1E-24 |
| 139 | g5339.t1 | SMART | SM00112 | CA_2 | 3259 | 3339 | 6.7E-22 |
| 127 | g5339.t1 | SMART | SM00112 | CA_2 | 3363 | 3446 | 1.3E-19 |
| 128 | g5339.t1 | SMART | SM00112 | CA_2 | 3469 | 3551 | 1.7E-28 |
| 132 | g5339.t1 | SMART | SM00112 | CA_2 | 3575 | 3657 | 6.7E-19 |
| 160 | g5339.t1 | SMART | SM00181 | egf_5 | 3850 | 3906 | 0.2 |
| 119 | g5339.t1 | SMART | SM00179 | egfca_6 | 3908 | 3944 | 0.077 |
| 161 | g5339.t1 | SMART | SM00181 | egf_5 | 3911 | 3944 | 6.5E-4 |
| 121 | g5339.t1 | SMART | SM00179 | egfca_6 | 3947 | 3985 | 0.037 |
| 159 | g5339.t1 | SMART | SM00181 | egf_5 | 3950 | 3985 | 1.2E-5 |
| 120 | g5339.t1 | SMART | SM00179 | egfca_6 | 3989 | 4023 | 0.013 |
| 158 | g5339.t1 | SMART | SM00181 | egf_5 | 3990 | 4023 | 8.4E-4 |
| 157 | g5339.t1 | SMART | SM00282 | LamG_3 | 4043 | 4203 | 1.1E-19 |
| 156 | g5339.t1 | SMART | SM00282 | LamG_3 | 4333 | 4467 | 5.7E-22 |
| 62 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 75 | 140 | 4.57E-8 |
| 51 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 134 | 254 | 1.09E-20 |
| 52 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 242 | 374 | 1.2E-24 |
| 44 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 364 | 474 | 3.01E-20 |
| 55 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 475 | 579 | 9.82E-28 |
| 54 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 575 | 702 | 3.14E-30 |
| 60 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 684 | 786 | 1.7E-20 |
| 59 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 803 | 902 | 1.57E-14 |
| 61 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 890 | 1013 | 1.28E-26 |
| 65 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 994 | 1102 | 2.75E-24 |
| 48 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1098 | 1211 | 2.28E-20 |
| 69 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1212 | 1317 | 2.75E-27 |
| 43 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1319 | 1422 | 6.15E-27 |
| 63 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1418 | 1546 | 1.31E-25 |
| 58 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1529 | 1641 | 3.14E-14 |
| 38 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1649 | 1764 | 2.71E-15 |
| 53 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1757 | 1862 | 1.7E-20 |
| 40 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1856 | 1959 | 7.59E-31 |
| 57 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1956 | 2076 | 2.71E-30 |
| 42 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2066 | 2169 | 4.28E-22 |
| 66 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2171 | 2287 | 1.11E-26 |
| 49 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2281 | 2393 | 2.43E-27 |
| 50 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2387 | 2490 | 1.7E-23 |
| 41 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2486 | 2594 | 3.71E-16 |
| 37 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2602 | 2703 | 3.14E-15 |
| 64 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2699 | 2817 | 2.14E-30 |
| 45 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2809 | 2915 | 1.14E-22 |
| 39 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2903 | 3023 | 3.28E-21 |
| 68 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3014 | 3139 | 4.43E-25 |
| 67 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3126 | 3237 | 2.28E-25 |
| 47 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3231 | 3341 | 2.62E-26 |
| 46 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3334 | 3440 | 4.57E-22 |
| 56 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3442 | 3553 | 1.2E-25 |
| 70 | g5339.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 3546 | 3651 | 5.57E-23 |
| 74 | g5339.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 3909 | 3947 | 7.54E-7 |
| 73 | g5339.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 3949 | 3986 | 4.19E-7 |
| 72 | g5339.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 4004 | 4223 | 2.97E-27 |
| 71 | g5339.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 4250 | 4482 | 1.19E-25 |
| 75 | g5339.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 279 | g5339.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 232 | g5339.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 24 | - |
| 118 | g5339.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
| 117 | g5339.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 4509 | 4531 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5339/g5339.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5339.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0007155 | cell adhesion | BP |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | BP |
| GO:0005509 | calcium ion binding | MF |
| GO:0005886 | plasma membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K16669 (protocadherin Fat 4)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
