Gene loci information

Transcript annotation

  • This transcript has been annotated as FK506-binding protein 59.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5343 g5343.t10 TTS g5343.t10 9023904 9023904
chr_2 g5343 g5343.t10 isoform g5343.t10 9024641 9025508
chr_2 g5343 g5343.t10 exon g5343.t10.exon1 9024641 9024645
chr_2 g5343 g5343.t10 cds g5343.t10.CDS1 9024641 9024645
chr_2 g5343 g5343.t10 exon g5343.t10.exon2 9024714 9025508
chr_2 g5343 g5343.t10 cds g5343.t10.CDS2 9024714 9025335
chr_2 g5343 g5343.t10 TSS g5343.t10 9025889 9025889

Sequences

>g5343.t10 Gene=g5343 Length=800
AGGAAGGAGAAGGCAAAGAACAACCATGCGATGGATGTGTTGTTTCTTGTCATTATACTG
GAACATTACTCGATGGCACCAAATTCGATAGTTCTTTAGATCGTAATGAACCTTTTGAAT
TTAAATTGGGTAAAGGACAAGTCATTCGATCATGGGATATAGGAGTTGCATCTATGCATA
AAGGTGAAAAGTGTATGCTTACATGTGCACCTGAGTATGCATACGGCGTTAGTGGTTCTC
CTCCAAATATTCCACCTAATGCGACATTAAAATTTGAGCTCGAATTGCTCGGTTGGAAAG
GTGAAGATGTGTCGAAAAATGGAGACAATGGCATTGAACGATATGTTATTGTAAAGAGTG
ACAAAAAGAAGACACCAAATGATGGTGCACGTGTGAAATGTAAAATTGTTGGAAGTTATG
AAGGTCGAGTTTTTGAAGAGCGTGATGTTGAGTTTAACATAGGCGAAGGTGAAGATTATA
ATATCATTCCTGGAGTTGAAACTGCGTTGGAGAAGATGCATGAACAAGAAACTTCGCGTT
TAATTATTAAGCCAAAGTATGCATTTGGTTCGGAAGGAAACGAACAATTTAAAATACCAC
CTGATGCAACTGTCGAATATTTAGTTACACTTCATGAATTTGAAAGAGAAGTTGAAGCGT
GGAAACTTGATGCTGAAGAAAGTTTGAAACAGGCTAAAATATTCAAAGAGAAAGGTACAA
ATTATTATAAATCAGATCGTTTTCAACAAGCTCTTAAATTCTATAAAAAGGGTCTTTCAT
TTCTATCAAATTGCGATACA

>g5343.t10 Gene=g5343 Length=209
MHKGEKCMLTCAPEYAYGVSGSPPNIPPNATLKFELELLGWKGEDVSKNGDNGIERYVIV
KSDKKKTPNDGARVKCKIVGSYEGRVFEERDVEFNIGEGEDYNIIPGVETALEKMHEQET
SRLIIKPKYAFGSEGNEQFKIPPDATVEYLVTLHEFEREVEAWKLDAEESLKQAKIFKEK
GTNYYKSDRFQQALKFYKKGLSFLSNCDT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g5343.t10 Coils Coil Coil 153 173 -
10 g5343.t10 Gene3D G3DSA:3.10.50.40 - 1 46 6.6E-15
9 g5343.t10 Gene3D G3DSA:3.10.50.40 - 47 160 3.9E-32
8 g5343.t10 Gene3D G3DSA:1.25.40.10 - 161 208 1.1E-7
3 g5343.t10 PANTHER PTHR10516:SF431 PEPTIDYLPROLYL ISOMERASE 1 205 1.8E-59
4 g5343.t10 PANTHER PTHR10516 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 205 1.8E-59
1 g5343.t10 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 1 39 4.6E-8
2 g5343.t10 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 65 153 5.2E-17
14 g5343.t10 ProSiteProfiles PS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 42 14.583
13 g5343.t10 ProSiteProfiles PS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 157 18.166
12 g5343.t10 ProSiteProfiles PS50005 TPR repeat profile. 174 207 8.319
7 g5343.t10 SUPERFAMILY SSF54534 FKBP-like 1 43 9.04E-14
6 g5343.t10 SUPERFAMILY SSF54534 FKBP-like 46 157 3.54E-25
5 g5343.t10 SUPERFAMILY SSF48452 TPR-like 166 205 6.01E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5343/g5343.t10; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5343.t10.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values