Gene loci information

Transcript annotation

  • This transcript has been annotated as FK506-binding protein 59.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5343 g5343.t11 TTS g5343.t11 9023904 9023904
chr_2 g5343 g5343.t11 isoform g5343.t11 9024714 9025791
chr_2 g5343 g5343.t11 exon g5343.t11.exon1 9024714 9025506
chr_2 g5343 g5343.t11 cds g5343.t11.CDS1 9024715 9025506
chr_2 g5343 g5343.t11 exon g5343.t11.exon2 9025735 9025791
chr_2 g5343 g5343.t11 cds g5343.t11.CDS2 9025735 9025791
chr_2 g5343 g5343.t11 TSS g5343.t11 9025889 9025889

Sequences

>g5343.t11 Gene=g5343 Length=850
ATGCCAGAAGTAATTGATTTATCAAATGATGGTGGAGTTTTGAAGGAGATATTAAAGGAA
GGAGAAGGCAAAGAACAACCATGCGATGGATGTGTTGTTTCTTGTCATTATACTGGAACA
TTACTCGATGGCACCAAATTCGATAGTTCTTTAGATCGTAATGAACCTTTTGAATTTAAA
TTGGGTAAAGGACAAGTCATTCGATCATGGGATATAGGAGTTGCATCTATGCATAAAGGT
GAAAAGTGTATGCTTACATGTGCACCTGAGTATGCATACGGCGTTAGTGGTTCTCCTCCA
AATATTCCACCTAATGCGACATTAAAATTTGAGCTCGAATTGCTCGGTTGGAAAGGTGAA
GATGTGTCGAAAAATGGAGACAATGGCATTGAACGATATGTTATTGTAAAGAGTGACAAA
AAGAAGACACCAAATGATGGTGCACGTGTGAAATGTAAAATTGTTGGAAGTTATGAAGGT
CGAGTTTTTGAAGAGCGTGATGTTGAGTTTAACATAGGCGAAGGTGAAGATTATAATATC
ATTCCTGGAGTTGAAACTGCGTTGGAGAAGATGCATGAACAAGAAACTTCGCGTTTAATT
ATTAAGCCAAAGTATGCATTTGGTTCGGAAGGAAACGAACAATTTAAAATACCACCTGAT
GCAACTGTCGAATATTTAGTTACACTTCATGAATTTGAAAGAGAAGTTGAAGCGTGGAAA
CTTGATGCTGAAGAAAGTTTGAAACAGGCTAAAATATTCAAAGAGAAAGGTACAAATTAT
TATAAATCAGATCGTTTTCAACAAGCTCTTAAATTCTATAAAAAGGGTCTTTCATTTCTA
TCAAATTGCG

>g5343.t11 Gene=g5343 Length=283
MPEVIDLSNDGGVLKEILKEGEGKEQPCDGCVVSCHYTGTLLDGTKFDSSLDRNEPFEFK
LGKGQVIRSWDIGVASMHKGEKCMLTCAPEYAYGVSGSPPNIPPNATLKFELELLGWKGE
DVSKNGDNGIERYVIVKSDKKKTPNDGARVKCKIVGSYEGRVFEERDVEFNIGEGEDYNI
IPGVETALEKMHEQETSRLIIKPKYAFGSEGNEQFKIPPDATVEYLVTLHEFEREVEAWK
LDAEESLKQAKIFKEKGTNYYKSDRFQQALKFYKKGLSFLSNC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g5343.t11 Coils Coil Coil 229 249 -
9 g5343.t11 Gene3D G3DSA:3.10.50.40 - 1 121 1.7E-46
8 g5343.t11 Gene3D G3DSA:3.10.50.40 - 122 236 8.2E-32
7 g5343.t11 Gene3D G3DSA:1.25.40.10 - 237 283 2.2E-7
3 g5343.t11 PANTHER PTHR10516:SF431 PEPTIDYLPROLYL ISOMERASE 6 280 6.4E-94
4 g5343.t11 PANTHER PTHR10516 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 280 6.4E-94
1 g5343.t11 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 24 115 2.4E-29
2 g5343.t11 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 141 229 1.0E-16
12 g5343.t11 ProSiteProfiles PS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 30 118 29.487
11 g5343.t11 ProSiteProfiles PS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 147 233 18.166
6 g5343.t11 SUPERFAMILY SSF54534 FKBP-like 9 119 1.87E-41
5 g5343.t11 SUPERFAMILY SSF54534 FKBP-like 122 233 7.46E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5343/g5343.t11; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5343.t11.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values