General information for g5343.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative FK506-binding protein 59.
Parent gene
- The parent gene g5343 is located on chr_2: 9024714..9025791 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5343 | g5343.t5 | TTS | g5343.t5 | 9023904 | 9023904 |
| chr_2 | g5343 | g5343.t5 | isoform | g5343.t5 | 9023982 | 9024641 |
| chr_2 | g5343 | g5343.t5 | exon | g5343.t5.exon1 | 9023982 | 9024072 |
| chr_2 | g5343 | g5343.t5 | cds | g5343.t5.CDS1 | 9023982 | 9024072 |
| chr_2 | g5343 | g5343.t5 | exon | g5343.t5.exon2 | 9024133 | 9024206 |
| chr_2 | g5343 | g5343.t5 | cds | g5343.t5.CDS2 | 9024133 | 9024206 |
| chr_2 | g5343 | g5343.t5 | exon | g5343.t5.exon3 | 9024293 | 9024641 |
| chr_2 | g5343 | g5343.t5 | cds | g5343.t5.CDS3 | 9024293 | 9024553 |
| chr_2 | g5343 | g5343.t5 | TSS | g5343.t5 | NA | NA |
Sequences
>g5343.t5 Gene=g5343 Length=514
ATCTGTTGAAGGTGAAGCAAGAACTGTGTCAGTCTCAATTTACTTGAATAAAGCATTGTG
CTATCAAAAACTTAATGATTACGATGAAATGAGACGTGTCTGCAATGAAGCATTATCAAT
GGAACCCAAAAATATTAAGGCTCTATATCGACGCGGTCAAGCGTACTTTACTCTTGGAGA
AATTGAAAATGCACTTGCTGATTTTGAAGCAGTTCATGAAATTGAGCCTGAAAACAAAGC
TGCTATTAATCAAATAACTATTTGCAAGCAAAAGATCAAATCGTATGTGGAAGAAGAAAA
GAAACGATATAAAAGTATGCTCTCCAGATATTGTTCTTCTGATGGGTCGAAAGAAGATGT
TCCACAATTAGAAGACCCTTTTGCTAATGTTTCGAAATTTGGAGAATGGACGGAGGAAGA
AAGATCTCACACTATCACAAAATTTGAGGAAGAAAATCCGGATGTAATTTTGTGTGATAA
TGTTTTCTTTAAGGAGGAATTGAAAAATATGTAA
>g5343.t5 Gene=g5343 Length=141
MRRVCNEALSMEPKNIKALYRRGQAYFTLGEIENALADFEAVHEIEPENKAAINQITICK
QKIKSYVEEEKKRYKSMLSRYCSSDGSKEDVPQLEDPFANVSKFGEWTEEERSHTITKFE
EENPDVILCDNVFFKEELKNM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g5343.t5 | Gene3D | G3DSA:1.25.40.10 | - | 2 | 89 | 0.0000000 |
| 2 | g5343.t5 | PANTHER | PTHR46423 | RNA POLYMERASE II-ASSOCIATED PROTEIN 3 | 5 | 75 | 0.0000000 |
| 1 | g5343.t5 | Pfam | PF00515 | Tetratricopeptide repeat | 17 | 49 | 0.0000000 |
| 7 | g5343.t5 | ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 1 | 49 | 15.3240000 |
| 6 | g5343.t5 | ProSiteProfiles | PS50005 | TPR repeat profile. | 16 | 49 | 11.5940000 |
| 4 | g5343.t5 | SMART | SM00028 | tpr_5 | 16 | 49 | 0.0000021 |
| 3 | g5343.t5 | SUPERFAMILY | SSF48452 | TPR-like | 4 | 78 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5343/g5343.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5343.t5.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
