General information for g545.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription initiation factor TFIID subunit 1.
Parent gene
- The parent gene g545 is located on chr_3: 4002413..4003652 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g545 | g545.t1 | TTS | g545.t1 | 3997290 | 3997290 |
| chr_3 | g545 | g545.t1 | isoform | g545.t1 | 3997367 | 4003652 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon1 | 3997367 | 3997857 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS1 | 3997367 | 3997857 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon2 | 3997921 | 3998121 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS2 | 3997921 | 3998121 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon3 | 3998182 | 4003202 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS3 | 3998182 | 4003202 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon4 | 4003260 | 4003419 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS4 | 4003260 | 4003419 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon5 | 4003477 | 4003484 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS5 | 4003477 | 4003484 |
| chr_3 | g545 | g545.t1 | TSS | g545.t1 | 4003621 | 4003621 |
| chr_3 | g545 | g545.t1 | exon | g545.t1.exon6 | 4003633 | 4003652 |
| chr_3 | g545 | g545.t1 | cds | g545.t1.CDS6 | 4003633 | 4003652 |
Sequences
>g545.t1 Gene=g545 Length=5901
ATGAAAGAATTACGACACAAACATCAAGCTGATAAGATGTCAAACATTGATTCTGAAGAG
GAACATGATGATGATGCATTGAATAAGCAATTAACTGGTTTTTTATTTGGTAATATTGAT
GAAGATGGCAAGTTAGAGTCAGATTTCCTAGATGAGGACGTTAAAAAACATGTTGCATCT
CTTTCAAAATTTGGACTTTACAATCTTATTGGATCTGGATTTGTATCAGATGATGAGGCA
AGTGATTCAGATTCGGATTCTTCAGATTCAGGCGCTGAAAAAGCAACTAAAAGAAGACGA
CTTTCTACACCGACAGATTATAAAATTAAAGAAGAGTCAGCAGAAGATTTCTTTGATATA
AATGAATTAGCTGATGAGCCACCACCAAAAATATATGATCCAAAAGATGATTATGATATC
GAAGATGCTATTCCTGCCGCAAAAGTTGTTGCTGCTGATGGAATGCAAGTTGATGGAAGT
TCTGATTCAAATAAAAATGGCTCATCAGATGATAAACAATTAATGCCACCTCCACCTCTT
GAAGCTGCTCCATCAGTAAAACAAGATGAAAGTAATTCAAATACAGAAACTACAGTAAAT
GGAACAACTGAAAAGAAAACAGATGGCAAAAAATTAGAAACTCCTCTTGGTGCAATGCTT
CCATCTAAATATGCAAATGTTGATGTCACTGAACTATTTCCAGACTTTCGACAAGACAAA
GTTTTACGATTTTCACGTCTTTTTGGTCCAGGCAAATTTTCAAGTCTCCCACAAATTTGG
CGAAGTGTTCGTCGCAAAGCTAAGAAACGAAGAAAAGAGCGTGAGAAGCTTACATCAGAA
TCTAATACAAGTGATTCAGATGCAGATTCTAGAAGATTTGTTGGATTTAATTTGAGATTT
GCTCCGACACCACCAAGAGAATTGATAGCATCTGACGATGAAGATAAATTATTAAGTGAA
AAAACAAATGAAGAAAAAGAAGAGAAATTAGATGACAATCAAAGTGGTGATCAAAAAGCA
AAAGCAGCAGCAGATTGGCGTTTTGGTCCAGCTCAAATATGGTATGATATGCTTGATGTT
GCAGAATCAGGCGAGGGATTCAATTATGGATTTAAAGTAAAAGATAAAAGCAAAACAGAA
GAAATAATTGAAGAATCAAAAAATGATCCAGGAGATCCAATTCCAGATGATGCTTATTTG
ATGGTTTCACAACTTCATTGGGAAGATGATGTTGTCTGGGATGGTTCACTTATAAAAGAT
AAAGTTGAGCAAAAATTAAATTCTAAATTTAATGCTGCAGGTTGGCTACCAAGTTCAGGG
TCAAGAACAGCTGCATTTTCACAACCAGGGAAATCTAATTTACCTGGGAGCTTGAGCAGT
AAAGATTCAAAATCAAATGTTTCTAATATTATTGGCAAATATGGGAAAGCAGCTCAACAA
TCAAAACCTCAAGAAGATCCTGATGAAACTTGGTATTCAATCTTTCCTGTTGAAAATGAA
GAACTTGTTTATAGTAAATGGGAAGAAGAAGTTATATGGGATGCTGAAGCAATGGATAAA
ATACCAAAACCAAAAGTTTTGACACTCGATCCAAATGATGAAAATATTATTTTGGGTATT
CCTGATGATATCGATCCATCTAAAATACAACAAAATTCAGGACCACAACCGAAGGTTAAA
ATTCCACATCCACATGTCAAGAAATCAAAGATTTTGCTTGGTAAAGCTGGTGTTATTAAT
GTTTTGGCTGAAGATACACCTCCACCTCCTCCAAAATCTCCCGATCGCGATCCGTTTAAT
ATTTCAAATGATGTTTATTATGCTCCTAAGACTTTCTCAATGATGGACGTAAAATTGAAC
ACTGCTGGAAGTCTTTTGCAACATTCTACGCCGGTCGTAGAATTGAGATCACCATTTATT
CCAACTCATATGGGTCCAATGAAATTAAGAATGTTTCATCGTCCTCATATGAAAAATTAT
TCACATGGAGCTCTTGCATCTACAAATTATCATCCAGTTGCTCCTTTACAAAAACATATT
AACAAGAAAGCACAACAGAGAGAAGCTGAAAGAATTGCAAGTGGTGGCGGTGATATTTTC
TTTATGCGTACACCAGAAGATTTGACTGGACGTGATGGTGAATTAATTTTGATTGAATAT
TGTGAAGAAAATCCACCATTATTGAGTCAAGTTGGTATGTGCTCAAAATTGAAAAATTAT
TACAAGCGTGATGCAGACAAACCTAAAGCTCCTACAGGATTTAAATATGGAGAAACTGTT
CCAGTTCCACATCCAAGTCCATTCTTGGGTGTTTTAAATCCTGGCCAACATATTACAGTC
GTTGAGAATAACATGTATCGTGCACCTATTTATGAACATCAAATTCCACAAAGCGATTTT
CTTGTTATAAGAACGCGTAATAATTATTACATTCGAGAGGCAGATGCACTTTTTAATGCA
GGTCAAGAATGTCCACTCTATGAAGTCCCTGGTCCAAATTCAAAGCGAGCAAACAATTTT
GTTCGTGATTTTTTGCAAGTTTTTATTTATCGATTGTTTTGGAAGTCACGTGACAATCCT
AGAAAAATTCGAATGGATGACATTAAAAGTGCATTTCCTGCACATTCAGAAAGTTCAATA
AGAAAACGTCTAAAGCAATGTGCTGATTTCAAAAGAACTGGCATGGATTCAAATTTTTGG
GTCATTAAACCAGATTTTCGTTTGCCATCAGAAGAAGAAATTCGTGCAATGGTTTCACCT
GAACAATGTTGTGCATACTTTAGTATGATTGCTGCTGAACAACGTTTAAAAGATGCTGGT
TATGGTGAAAAATTCATTTTTGCACAACAAGAAGATGACGATGAAGAAATGCAATTGAAA
ATGGATGATGAAGTTAAAGTTGCACCATGGAATACAACAAGAGCATATTTGCAAGCAATG
CGTGGTCGTTGCATTCTTCAATTAAATGGACCTGCCGATCCAACTGGTTGTGGTGAAGGC
TTTTCATATGTTCGAATGCCAAATAAACCAACACAAAATAAAGAAGAACAAGAAAATCAA
CCTAAAAGAACAGTAACAGGAACTGATGCTGATCTTCGTCGATTACCTTTGAATCGAGCT
AAAGAATTGTTGCGAAAATATAATGTGCCCGAAGAAGAGATTAAAAAGTTATCTCGATGG
GAAGTTATTGATGTTGTTCGTACATTATCAACAGAAAAATCAAAAGCTGGTGAAGAAGGA
ATGGACAAGTTTTCGAGAGGTAATCGTTTTTCAATTGCTGAGCATCAAGAAAGATATAAA
GAAGAATGTCAGAGAATTTTTAATCTTCAAAATCGCGTCATGGCAAGTTCAGAAGTTTTA
TCAACGGATGAAGATGAATCGAGTGCATCAGAAGAATCAGATTTAGAAGAAATGGGTAAA
AATCTAGAAAATATGCTTGTTAACAAGAAGACATCATCGCAAGTAATTAAAGAACGTGAA
GAACTGGAGAGACAAGAATTACTAAAATTGATTGAAAGTAATCCAAAAGGAGGAAAAAAG
AAGGAAGAAGAGCAGCAACAAGCTTCACAATCACAAGTTACAAGAATTTTGAAAATCACA
AGAACATTTAGAAATAGTGAAGGAAGGGAATATACTCGAGCTGAAACTGTTCGTCGACCT
GCAGTTATTGATGCTTATGAAAAAATCAGAAGAACAAAAGATGATGAATTTATTAAACGT
TTTGCATCAATGGATGAAGCACAGAAAGAAGAAATGAAACGTGAACGTCGTAGAATACAA
GAGCAATTGCGAAGAATCAAGAGAAATCAAGAAAAGATTAATGCTCAAGCTTCTGAAACA
CTAACAACTCTTGGTGACCGTATGGTTCATTCAAGTAGCTCAAGTCGCGATCCTTCTGTA
AGTAAAGAATCTCCATTGAAAAAGAAAGTCAAATTGAAGCCAGATTTAAAATTGAAATGT
GGTGCTTGTGGTGCTGTTGGTCATATGAGAACTAATAAAGCTTGTCCAAAATACACGGGA
ATAATGCCGCCAGTTTCACCAGTTCAAGTTGCTTTAACAGAAGAGCAAGAAGAAGAAATT
GAAAAAGAATTAAATGCTGAAGATGAAGATTTAGTAAATGTTGATGGAACAAAGGTTAAA
TTGAGCAGTAAATTATTGAAACGACATGAAGATGTAAAGAGACGTGCATTGTTGTTGAAA
GTTCCTCGTGATGCAATGGGTAAAGTGAAACGTAGAAGAATGGGATTGCCAGACGAATAT
TGTGACTATTTGCAATATAACAAAACTGCTCATCGTGCAAGAACAGATCCAATTGTTTTA
CTTTGCTCGATACTTGAAGATATTTTAAACGAACTCAGAGATTTACCTGATATGCAGCCA
TTCATGTTTCCCGTTAATGCCAAGAAAGTCCCTGACTATTATAAAATCATTCAAAATCCA
ATGGACTTGACAACGATGCGTGATAAATTACGACAACGAAGATACAATACACGTGAAGAG
TTTTTGGCAGATATAAATTTAATTGTTGACAATTCTGCACTTTATAATGGACCAACTAAT
AACATAACAATGGCAGCAAAAAGATTGCTTCAAAAATGTATCGATAGAATATCTGAAAAG
GAAGAGAAACTCATATATTTGGAGAAAGCCATTAATCCTCTATTAGGTGATGATGATCAA
GCATCATTGTCATTCATATTTGAAAAGTTCTTGAATACTAAATTGAAAGTGCGACAAGAG
AGTTGGCCATTTATTAAGCCTGTTAATAAGAAATTAGTAAAAGGATATTATGACATAATT
AAAAATCCGATGGACTTGGAAACTATGACAAAGAAAGTTTCTGCACATCGTTACCACTCA
AGAGCTGATTTCCTTGCTGATCTTCAATTAATTGCAAGCAATAGTGAAAAATTCAATGGT
GAAGATTCTAAATTGACAAAAGAGGCAAAATTGTTGGTTGATTTTGCTCGAGAATCGCTC
GAAGGGCTTGACATTAGTCATTTGGAAGAAAACATTGCAAAAGTTCAAGAACGTGCAAAA
TTAGAATTCAGTTGGGGTGATGATGAGTCATTTGCTGATTATCCTTCAAGAAGACCATCA
AGGGAAGGCGATGATTTAGATGATAGTTCTCGACCTGGACCTTCTATAATTACTCCACAG
ATAGAAGTAAAAAGATCAAGAGGAAGACCTCGTAAAAATCCTGGTGCAGCAACAAGTAAA
TATGTCAAAAAGGACAAAACGAAACCGATTGAAGAAGTTATTGATGTTGTGGGCGATTTT
GGTCCTGGTCCAAGCTCAAAACAAGAAGAGCCAAGGTATCCAATTGAAAATGAAAGTTTT
GGTTTTGATGTAACTGGCATGCAATCAAATGAAATGCAGAATCCACAAATGATGCAACAA
CAACAGATGGGTCAAGATGATAATGACAGTCAACAAGCTGCAGAGGCAATGATTCAGTTA
GGATATTATCCGACACAGCAACAACAAGATGAATCAATGGACTTTGATCCAAATTATGAT
CCATCTGATTTCCTCATGACAAAGAAAGATTCAAATGATGTTCAAGTTCAACAGACTGAT
CAACAATATCAAGAAAACTTTGACTATTCTGGTGGCATTCAAGAAGGTGCCGGTGGTGAT
GAAATGCAACAGCAAAACTATTATGGAGCATATGCACAGCAACAATCGTTTAATGTTAGC
GACTATTCTTTCCAATCTCAACAAACGTCAATGATGCAAGAAGAATTCTCTCAATCACAG
ACACAACCAATTTTGGCAGATGGAGGCGGTTTGGCTGATTTAGAAATTTCTGACTCTGAC
GATGAAGATCAAAATGAGAGAAATTCATCAGAGAATCAAGCAAACACAAGTAAAGAAGAT
GATGAGGGATTGTGGTTTTAA
>g545.t1 Gene=g545 Length=1966
MKELRHKHQADKMSNIDSEEEHDDDALNKQLTGFLFGNIDEDGKLESDFLDEDVKKHVAS
LSKFGLYNLIGSGFVSDDEASDSDSDSSDSGAEKATKRRRLSTPTDYKIKEESAEDFFDI
NELADEPPPKIYDPKDDYDIEDAIPAAKVVAADGMQVDGSSDSNKNGSSDDKQLMPPPPL
EAAPSVKQDESNSNTETTVNGTTEKKTDGKKLETPLGAMLPSKYANVDVTELFPDFRQDK
VLRFSRLFGPGKFSSLPQIWRSVRRKAKKRRKEREKLTSESNTSDSDADSRRFVGFNLRF
APTPPRELIASDDEDKLLSEKTNEEKEEKLDDNQSGDQKAKAAADWRFGPAQIWYDMLDV
AESGEGFNYGFKVKDKSKTEEIIEESKNDPGDPIPDDAYLMVSQLHWEDDVVWDGSLIKD
KVEQKLNSKFNAAGWLPSSGSRTAAFSQPGKSNLPGSLSSKDSKSNVSNIIGKYGKAAQQ
SKPQEDPDETWYSIFPVENEELVYSKWEEEVIWDAEAMDKIPKPKVLTLDPNDENIILGI
PDDIDPSKIQQNSGPQPKVKIPHPHVKKSKILLGKAGVINVLAEDTPPPPPKSPDRDPFN
ISNDVYYAPKTFSMMDVKLNTAGSLLQHSTPVVELRSPFIPTHMGPMKLRMFHRPHMKNY
SHGALASTNYHPVAPLQKHINKKAQQREAERIASGGGDIFFMRTPEDLTGRDGELILIEY
CEENPPLLSQVGMCSKLKNYYKRDADKPKAPTGFKYGETVPVPHPSPFLGVLNPGQHITV
VENNMYRAPIYEHQIPQSDFLVIRTRNNYYIREADALFNAGQECPLYEVPGPNSKRANNF
VRDFLQVFIYRLFWKSRDNPRKIRMDDIKSAFPAHSESSIRKRLKQCADFKRTGMDSNFW
VIKPDFRLPSEEEIRAMVSPEQCCAYFSMIAAEQRLKDAGYGEKFIFAQQEDDDEEMQLK
MDDEVKVAPWNTTRAYLQAMRGRCILQLNGPADPTGCGEGFSYVRMPNKPTQNKEEQENQ
PKRTVTGTDADLRRLPLNRAKELLRKYNVPEEEIKKLSRWEVIDVVRTLSTEKSKAGEEG
MDKFSRGNRFSIAEHQERYKEECQRIFNLQNRVMASSEVLSTDEDESSASEESDLEEMGK
NLENMLVNKKTSSQVIKEREELERQELLKLIESNPKGGKKKEEEQQQASQSQVTRILKIT
RTFRNSEGREYTRAETVRRPAVIDAYEKIRRTKDDEFIKRFASMDEAQKEEMKRERRRIQ
EQLRRIKRNQEKINAQASETLTTLGDRMVHSSSSSRDPSVSKESPLKKKVKLKPDLKLKC
GACGAVGHMRTNKACPKYTGIMPPVSPVQVALTEEQEEEIEKELNAEDEDLVNVDGTKVK
LSSKLLKRHEDVKRRALLLKVPRDAMGKVKRRRMGLPDEYCDYLQYNKTAHRARTDPIVL
LCSILEDILNELRDLPDMQPFMFPVNAKKVPDYYKIIQNPMDLTTMRDKLRQRRYNTREE
FLADINLIVDNSALYNGPTNNITMAAKRLLQKCIDRISEKEEKLIYLEKAINPLLGDDDQ
ASLSFIFEKFLNTKLKVRQESWPFIKPVNKKLVKGYYDIIKNPMDLETMTKKVSAHRYHS
RADFLADLQLIASNSEKFNGEDSKLTKEAKLLVDFARESLEGLDISHLEENIAKVQERAK
LEFSWGDDESFADYPSRRPSREGDDLDDSSRPGPSIITPQIEVKRSRGRPRKNPGAATSK
YVKKDKTKPIEEVIDVVGDFGPGPSSKQEEPRYPIENESFGFDVTGMQSNEMQNPQMMQQ
QQMGQDDNDSQQAAEAMIQLGYYPTQQQQDESMDFDPNYDPSDFLMTKKDSNDVQVQQTD
QQYQENFDYSGGIQEGAGGDEMQQQNYYGAYAQQQSFNVSDYSFQSQQTSMMQEEFSQSQ
TQPILADGGGLADLEISDSDDEDQNERNSSENQANTSKEDDEGLWF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g545.t1 | CDD | cd05511 | Bromo_TFIID | 1441 | 1552 | 3.37865E-53 |
| 18 | g545.t1 | Coils | Coil | Coil | 1092 | 1112 | - |
| 20 | g545.t1 | Coils | Coil | Coil | 1242 | 1279 | - |
| 19 | g545.t1 | Coils | Coil | Coil | 1350 | 1370 | - |
| 17 | g545.t1 | Gene3D | G3DSA:1.10.1100.10 | - | 27 | 80 | 1.7E-8 |
| 16 | g545.t1 | Gene3D | G3DSA:1.20.920.10 | Histone Acetyltransferase; Chain A | 1435 | 1551 | 5.1E-100 |
| 15 | g545.t1 | Gene3D | G3DSA:1.20.920.10 | Histone Acetyltransferase; Chain A | 1552 | 1672 | 5.1E-100 |
| 41 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - |
| 31 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 217 | - |
| 38 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 117 | - |
| 29 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 143 | - |
| 32 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 171 | - |
| 30 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 202 | - |
| 35 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 288 | - |
| 36 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - |
| 37 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 465 | - |
| 28 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1136 | - |
| 33 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1192 | - |
| 43 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1186 | - |
| 42 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1269 | 1308 | - |
| 44 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1273 | 1300 | - |
| 39 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1692 | 1744 | - |
| 45 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1692 | 1709 | - |
| 25 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1790 | 1880 | - |
| 40 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1790 | 1835 | - |
| 34 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1848 | 1869 | - |
| 26 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1906 | 1966 | - |
| 27 | g545.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1906 | 1925 | - |
| 6 | g545.t1 | PANTHER | PTHR13900:SF1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 | 10 | 1679 | 0.0 |
| 7 | g545.t1 | PANTHER | PTHR13900 | TRANSCRIPTION INITIATION FACTOR TFIID | 10 | 1679 | 0.0 |
| 10 | g545.t1 | PRINTS | PR00503 | Bromodomain signature | 1456 | 1469 | 3.7E-14 |
| 11 | g545.t1 | PRINTS | PR00503 | Bromodomain signature | 1470 | 1486 | 3.7E-14 |
| 9 | g545.t1 | PRINTS | PR00503 | Bromodomain signature | 1486 | 1504 | 3.7E-14 |
| 8 | g545.t1 | PRINTS | PR00503 | Bromodomain signature | 1504 | 1523 | 3.7E-14 |
| 4 | g545.t1 | Pfam | PF09247 | TATA box-binding protein binding | 18 | 70 | 3.5E-16 |
| 5 | g545.t1 | Pfam | PF12157 | Protein of unknown function (DUF3591) | 599 | 1064 | 3.3E-159 |
| 1 | g545.t1 | Pfam | PF15288 | Zinc knuckle | 1317 | 1357 | 4.0E-10 |
| 2 | g545.t1 | Pfam | PF00439 | Bromodomain | 1445 | 1527 | 6.5E-21 |
| 3 | g545.t1 | Pfam | PF00439 | Bromodomain | 1574 | 1650 | 3.6E-19 |
| 24 | g545.t1 | ProSitePatterns | PS00633 | Bromodomain signature. | 1581 | 1638 | - |
| 47 | g545.t1 | ProSiteProfiles | PS50014 | Bromodomain profile. | 1453 | 1523 | 21.938 |
| 46 | g545.t1 | ProSiteProfiles | PS50014 | Bromodomain profile. | 1576 | 1646 | 20.241 |
| 22 | g545.t1 | SMART | SM00297 | bromo_6 | 1434 | 1542 | 1.5E-32 |
| 23 | g545.t1 | SMART | SM00297 | bromo_6 | 1556 | 1665 | 6.3E-32 |
| 14 | g545.t1 | SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 27 | 71 | 1.11E-11 |
| 13 | g545.t1 | SUPERFAMILY | SSF47370 | Bromodomain | 1431 | 1549 | 1.1E-34 |
| 12 | g545.t1 | SUPERFAMILY | SSF47370 | Bromodomain | 1565 | 1661 | 1.57E-28 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g545/g545.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g545.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K03125 (transcription initiation factor TFIID subunit 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
