Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g545 | g545.t33 | isoform | g545.t33 | 4002413 | 4003633 |
chr_3 | g545 | g545.t33 | exon | g545.t33.exon1 | 4002413 | 4003633 |
chr_3 | g545 | g545.t33 | cds | g545.t33.CDS1 | 4002413 | 4002928 |
chr_3 | g545 | g545.t33 | TTS | g545.t33 | 4002418 | 4002418 |
chr_3 | g545 | g545.t33 | TSS | g545.t33 | 4003621 | 4003621 |
>g545.t33 Gene=g545 Length=1221
AGTTAGGTAGTGGCGAATACAAAATTATTTTGACTTGATAGCATCAATTTCGTAAATTTT
TTAATAATTTGATTTTGCACAGTAAATACTTTTTAAAAGTGAGAAAACTGTAAATAAAGA
CTTAGATAAGAATTAATTTTATTTAATAGACATCAAGGTGAGTTATTTTCATACAAATTT
TATAACTAAATTTATAAAATATAAATTTTTGTAGCTGATAAGATGTCAAACATTGATTCT
GAAGAGGAACATGATGATGATGCATTGAATAAGCAATTAACTGGTTTTTTATTTGGTAAT
ATTGATGAAGATGGCAAGTTAGAGTCAGATTTCCTAGATGAGGACGTTAAAAAACATGTT
GCATCTCTTTCAAAGTAAATATAAACAAACATCCAGTTGAGAATTTTATTAATTTTCATT
TGTCCTAATAGATTTGGACTTTACAATCTTATTGGATCTGGATTTGTATCAGATGATGAG
GCAAGTGATTCAGATTCGGATTCTTCAGATTCAGGCGCTGAAAAAGCAACTAAAAGAAGA
CGACTTTCTACACCGACAGATTATAAAATTAAAGAAGAGTCAGCAGAAGATTTCTTTGAT
ATAAATGAATTAGCTGATGAGCCACCACCAAAAATATATGATCCAAAAGATGATTATGAT
ATCGAAGATGCTATTCCTGCCGCAAAAGTTGTTGCTGCTGATGGAATGCAAGTTGATGGA
AGTTCTGATTCAAATAAAAATGGCTCATCAGATGATAAACAATTAATGCCACCTCCACCT
CTTGAAGCTGCTCCATCAGTAAAACAAGATGAAAGTAATTCAAATACAGAAACTACAGTA
AATGGAACAACTGAAAAGAAAACAGATGGCAAAAAATTAGAAACTCCTCTTGGTGCAATG
CTTCCATCTAAATATGCAAATGTTGATGTCACTGAACTATTTCCAGACTTTCGACAAGAC
AAAGTTTTACGATTTTCACGTCTTTTTGGTCCAGGCAAATTTTCAAGTCTCCCACAAATT
TGGCGAAGTGTTCGTCGCAAAGCTAAGAAACGAAGAAAAGAGCGTGAGAAGCTTACATCA
GAATCTAATACAAGTGATTCAGATGCAGATTCTAGAAGATTTGTTGGATTTAATTTGAGA
TTTGCTCCGACACCACCAAGAGAATTGATAGCATCTGACGATGAAGATAAATTATTAAGT
GAAAAAACAAATGAAGAAAAA
>g545.t33 Gene=g545 Length=172
MQVDGSSDSNKNGSSDDKQLMPPPPLEAAPSVKQDESNSNTETTVNGTTEKKTDGKKLET
PLGAMLPSKYANVDVTELFPDFRQDKVLRFSRLFGPGKFSSLPQIWRSVRRKAKKRRKER
EKLTSESNTSDSDADSRRFVGFNLRFAPTPPRELIASDDEDKLLSEKTNEEK
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
10 | g545.t33 | Coils | Coil | Coil | 163 | 172 | - |
7 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - |
9 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
8 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 48 | - |
4 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 134 | - |
6 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - |
5 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 172 | - |
3 | g545.t33 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 172 | - |
1 | g545.t33 | PANTHER | PTHR13900:SF1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 | 36 | 163 | 1.4E-17 |
2 | g545.t33 | PANTHER | PTHR13900 | TRANSCRIPTION INITIATION FACTOR TFIID | 36 | 163 | 1.4E-17 |
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g545/g545.t33; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g545.t33.fa.iupred3.txt does not exist
There are no GO annotations for this transcript.
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.