General information for g5450.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative 1-phosphatidylinositol 3-phosphate 5-kinase.
Parent gene
- The parent gene g5450 is located on chr_2: 9665280..9666587 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5450 | g5450.t10 | TTS | g5450.t10 | 9661308 | 9661308 |
| chr_2 | g5450 | g5450.t10 | isoform | g5450.t10 | 9661398 | 9662193 |
| chr_2 | g5450 | g5450.t10 | exon | g5450.t10.exon1 | 9661398 | 9661744 |
| chr_2 | g5450 | g5450.t10 | cds | g5450.t10.CDS1 | 9661615 | 9661744 |
| chr_2 | g5450 | g5450.t10 | exon | g5450.t10.exon2 | 9661801 | 9662193 |
| chr_2 | g5450 | g5450.t10 | cds | g5450.t10.CDS2 | 9661801 | 9662102 |
| chr_2 | g5450 | g5450.t10 | TSS | g5450.t10 | 9662193 | 9662193 |
Sequences
>g5450.t10 Gene=g5450 Length=740
ATTGAGTGAGAGTTTAAGATGGGATGCAAAAGGCGGAAAAAGTGGATCAAAATTTAGTAA
AACAAAAGATGATCGTTTTATTTTGAAAGAGATGTCAAAGCAAGATGTAGGTGAATTTGA
AAAATTTGCACCAAACTACTTTGAGTATGTCAATGATTGCGTTTTGAAAAATCATCCAAC
ATTATTAGCAAAAATATTTGGAATATACAAAGTCATTATAAAGAAGAAGGAGTCAGTTAC
TGAAAAAGCCGTTTTAGTAATTGAAAATTTATTTTGCAATAGAAGAGTTACAAACAAATA
TGACTTGAAAGGTTCTGAACGAAATAGATTAGTAGATACAGCGGGCCAAACTGGTGATAC
TGTTTTGTTGGATGAAAATTTAATTAAAAGTAACTTCTTGGTCGAGACCTCTTTATATTT
TAACACATTCAAGGATAGTTTTGCGAAACGCTATTCTCAGAGATTCGTCATTTTTGGAGA
AGAATCATGTAATGGATTATTCATTATTGGTTGGACTGGATGACGATAATTTCCTTATTG
TTGGCATTATTGATTACATAAGAAAATACACTATCGATAAAAGAGTTGAATCTTTTCTAA
AGCAAGTAGTAGATCAAAGTAAATTACCAACTATAGTTTCACCAAACGTCTATAAAAATC
GCTTTATTGATGCTATGGATCGTTATTTCCTTTGCATTCCTGAGCGTTTTGATTCCAAAT
TTATGTCAGTTATGAAATAA
>g5450.t10 Gene=g5450 Length=143
MSKQDVGEFEKFAPNYFEYVNDCVLKNHPTLLAKIFGIYKVIIKKKESVTEKAVLVIENL
FCNRRVTNKYDLKGSERNRLVDTAGQTGDTVLLDENLIKSNFLVETSLYFNTFKDSFAKR
YSQRFVIFGEESCNGLFIIGWTG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g5450.t10 | Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1 | 58 | 0.000019 |
| 2 | g5450.t10 | PANTHER | PTHR45748:SF7 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED | 1 | 100 | 0.000000 |
| 3 | g5450.t10 | PANTHER | PTHR45748 | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED | 1 | 100 | 0.000000 |
| 1 | g5450.t10 | Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 2 | 104 | 0.000000 |
| 7 | g5450.t10 | ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1 | 143 | 19.267000 |
| 5 | g5450.t10 | SMART | SM00330 | PIPK_2 | 1 | 134 | 0.000067 |
| 4 | g5450.t10 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1 | 104 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5450/g5450.t10; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5450.t10.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016307 | phosphatidylinositol phosphate kinase activity | MF |
| GO:0046488 | phosphatidylinositol metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
