General information for g5718.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylate kinase isoenzyme 1.
Parent gene
- The parent gene g5718 is located on chr_2: 11379536..11382717 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5718 | g5718.t10 | TTS | g5718.t10 | 11379234 | 11379234 |
| chr_2 | g5718 | g5718.t10 | isoform | g5718.t10 | 11379536 | 11381659 |
| chr_2 | g5718 | g5718.t10 | exon | g5718.t10.exon1 | 11379536 | 11379848 |
| chr_2 | g5718 | g5718.t10 | cds | g5718.t10.CDS1 | 11379536 | 11379848 |
| chr_2 | g5718 | g5718.t10 | exon | g5718.t10.exon2 | 11379911 | 11380130 |
| chr_2 | g5718 | g5718.t10 | cds | g5718.t10.CDS2 | 11379911 | 11380008 |
| chr_2 | g5718 | g5718.t10 | exon | g5718.t10.exon3 | 11380194 | 11380249 |
| chr_2 | g5718 | g5718.t10 | exon | g5718.t10.exon4 | 11381657 | 11381659 |
| chr_2 | g5718 | g5718.t10 | TSS | g5718.t10 | 11381744 | 11381744 |
Sequences
>g5718.t10 Gene=g5718 Length=592
ATGGTTGTTGATTCAAAGACTCCAATTATTTGGGTTTTAGGCGGACCAGGATGCGGTATG
CAAGGGAACACAGTGTGATAAGATTGTTGCCAAGTATGGCTTTAACCACCTTTCAACTGG
CGACTTACTACGTGCTGAAGTAGCTTCAGGTTCAGTAAAGGGTCAAGAGTTGTTGAGTAT
CATGAAAACAGGTGGATTAGTTAGCAATGAAGCAGTTCTTGAACTTCTTGCTGCTGCTAT
GTCAAAAATTGAAAATGCCAAAGGATTTCTTATTGATGGATACCCAAGAGAGGAAGCACA
AGGACGAGAATTTGAAAAGCTTATTCGTCCAGTTGATCTCGTTCTTTACTTTGAATGCTC
CAATGAAACACTTGTGAATCGTATTCTTGTTCGTGCTGCTGCCTCTGTTGAAAAGCGTGC
TGATGATAATGAAGAAACTTTAAAGACAAGAATCGCAACATTCAGAGCCAATACTGAGAA
AATTCTAATTCAATATCCTGATAAACTTAGACGCATTAATGCCGAACGTGGAGTTGATGA
AATTTTTGCAGAAGTATCTGATGCCATTGATGCTACATTAGCTAAAAAATAA
>g5718.t10 Gene=g5718 Length=136
MKTGGLVSNEAVLELLAAAMSKIENAKGFLIDGYPREEAQGREFEKLIRPVDLVLYFECS
NETLVNRILVRAAASVEKRADDNEETLKTRIATFRANTEKILIQYPDKLRRINAERGVDE
IFAEVSDAIDATLAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g5718.t10 | CDD | cd01428 | ADK | 1 | 121 | 2.15657E-33 |
| 8 | g5718.t10 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 132 | 4.0E-33 |
| 4 | g5718.t10 | Hamap | MF_00235 | Adenylate kinase [adk]. | 1 | 130 | 20.965721 |
| 2 | g5718.t10 | PANTHER | PTHR23359 | NUCLEOTIDE KINASE | 1 | 130 | 1.6E-36 |
| 3 | g5718.t10 | PANTHER | PTHR23359:SF70 | ADENYLATE KINASE 1, ISOFORM B | 1 | 130 | 1.6E-36 |
| 5 | g5718.t10 | PRINTS | PR00094 | Adenylate kinase signature | 29 | 45 | 8.2E-9 |
| 6 | g5718.t10 | PRINTS | PR00094 | Adenylate kinase signature | 79 | 94 | 8.2E-9 |
| 1 | g5718.t10 | Pfam | PF00406 | Adenylate kinase | 1 | 106 | 4.2E-21 |
| 10 | g5718.t10 | ProSitePatterns | PS00113 | Adenylate kinase signature. | 29 | 40 | - |
| 7 | g5718.t10 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 129 | 3.39E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5718/g5718.t10; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5718.t10.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
| GO:0019205 | nucleobase-containing compound kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed