General information for g5762.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase subunit E.
Parent gene
- The parent gene g5762 is located on chr_2: 11805375..11806430 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5762 | g5762.t4 | TTS | g5762.t4 | 11803490 | 11803490 |
| chr_2 | g5762 | g5762.t4 | isoform | g5762.t4 | 11803927 | 11806119 |
| chr_2 | g5762 | g5762.t4 | exon | g5762.t4.exon1 | 11803927 | 11804799 |
| chr_2 | g5762 | g5762.t4 | cds | g5762.t4.CDS1 | 11804792 | 11804799 |
| chr_2 | g5762 | g5762.t4 | exon | g5762.t4.exon2 | 11804860 | 11805391 |
| chr_2 | g5762 | g5762.t4 | cds | g5762.t4.CDS2 | 11804860 | 11805391 |
| chr_2 | g5762 | g5762.t4 | exon | g5762.t4.exon3 | 11806087 | 11806119 |
| chr_2 | g5762 | g5762.t4 | cds | g5762.t4.CDS3 | 11806087 | 11806119 |
| chr_2 | g5762 | g5762.t4 | TSS | g5762.t4 | 11806219 | 11806219 |
Sequences
>g5762.t4 Gene=g5762 Length=1438
ATGGCTCTAAGCGATGCTGATGTTCAAAAACAGATCAAACATATGATGGCTTTCATCGAG
CAAGAAGCCAATGAAAAAGCTGAAGAAATTGACGCAAAAGCTGAAGAGGAGTTCAATATT
GAAAAAGGTCGTTTGGTGCAACAACAGCGTATTAAAATTATGGAATATTACGAAAAGAAA
GAGAAACAAGTTGAATTACAGAAAAAGATTCAATCATCAAACATGCTAAATCAAGCACGT
CTAAAAGTACTCAAGGTTCGCGAAGACCATGTCCGTGCTGTACTTGATGAAGCTAGAAGA
AGATTGGGTGAAGTCACTCGTGATCCATCAAAATATTCACAGCTTCTTCAATCTTTGGTA
ACACAAGGATTGTATCAAATGATGGAAGCAAACGTTTTAGTTCGCGGACGACAGGCTGAT
GCCCAACTTATTCAAAACGTCCTTCCCTCTTCTGTAGAACAATACAAACGTGAAACCGGC
AAGGATGTCGTTGTGACACTTGATACTGAAAACTTCCTTCCAGCAGATTCAACTGGCGGT
ATTGAGCTCAGTGCTCTTCAAGGACAATTATAGGTCGTTAACACCCTCGAGTCTCGATTG
GAAATGATTGCTCAACAGTTAGTTCCTGCTATTCGTACAGCACTCTTTGGTAAAAATAAC
AACCGTAAATTCACAGATTAAGTGCATGCACCAAAATTAAATTATCATAAAACAAAACAT
TTTCATCGTATAACAATATTGCAAGTAACTGTTTTGCCCTTTATTATTTCTGTTTATTTT
TTTGCCATCAAATTGAAAAGAAACGATTTTTACCCGTTGAATGATTTTTGTTCGTTTGAG
CATAGCCGAAAAATTATTATTGACATATTGATTATAAACGCGCGCTATAGAACATAAAAA
ATATATTTAGTCGTTACACTATTATATATGCATGAAAGGTTTAATTTTTTTTCTTTCTTG
TTTAAAGAAGTGTTTACTTATTAAAACTCTTTCATTTTGCATTCCTTCTGTAAAAGATGA
AACAAAATTTATTATATTATGTACGAGAGCGATATATACTTACTAGTGAGATATAAAAAA
ATTTATTCAATTTTAATCGTTGCAAAAAGAAATCTTCTTAGTATGGTCTTTATTAAAATA
TAATATATATTAATAAGTGTTCAGAAAATGAAGAGTAGAAACAAAGACACATAAAAATTC
AGCCTCGACAAAGACAACCTGTTTTTATGTGGTTCCGATTTACATTTAGTTCATTTTAAC
GTCCAAATTGTAAATGCTTGTCCAATGTTAGTCTATTAGGAGTAAACTACATATATTCAA
ACCAAAAAAAAGTTAAAAAATATTGATAATGAAAACTTGGGAAAGTGCACAAGAGCAAAA
ATCACAACTATCGAAATACAACAACAATTATTCCAAGTTAGTTATCACTGCTTGTAAC
>g5762.t4 Gene=g5762 Length=190
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRIKIMEYYEKK
EKQVELQKKIQSSNMLNQARLKVLKVREDHVRAVLDEARRRLGEVTRDPSKYSQLLQSLV
TQGLYQMMEANVLVRGRQADAQLIQNVLPSSVEQYKRETGKDVVVTLDTENFLPADSTGG
IELSALQGQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g5762.t4 | Coils | Coil | Coil | 16 | 36 | - |
| 5 | g5762.t4 | Gene3D | G3DSA:3.30.2320.30 | - | 93 | 190 | 3.0E-23 |
| 2 | g5762.t4 | PANTHER | PTHR45715 | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 4 | 189 | 1.9E-72 |
| 3 | g5762.t4 | PANTHER | PTHR45715:SF3 | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 4 | 189 | 1.9E-72 |
| 1 | g5762.t4 | Pfam | PF01991 | ATP synthase (E/31 kDa) subunit | 18 | 189 | 6.7E-61 |
| 4 | g5762.t4 | SUPERFAMILY | SSF160527 | V-type ATPase subunit E-like | 89 | 188 | 1.19E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5762/g5762.t4; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5762.t4.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1902600 | proton transmembrane transport | BP |
| GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | CC |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
