General information for g5763.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5763 is located on chr_2: 11808354..11809722 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5763 | g5763.t2 | isoform | g5763.t2 | 11806430 | 11807983 |
| chr_2 | g5763 | g5763.t2 | exon | g5763.t2.exon1 | 11806430 | 11806795 |
| chr_2 | g5763 | g5763.t2 | exon | g5763.t2.exon2 | 11807436 | 11807983 |
| chr_2 | g5763 | g5763.t2 | cds | g5763.t2.CDS1 | 11807439 | 11807981 |
| chr_2 | g5763 | g5763.t2 | TSS | g5763.t2 | NA | NA |
| chr_2 | g5763 | g5763.t2 | TTS | g5763.t2 | NA | NA |
Sequences
>g5763.t2 Gene=g5763 Length=914
ATGAGGAGAAAACTAATAAAAGAATTGTAAAAAACAAAACGAGTTTTTCGTAAATCAAAT
AAGAAACGTTCAGCTGCTAGTTAATTTTTCATGAGCTCATTTGTGGTGTTGAAGAGAAGT
TATTGGAAAATAAATCAAAAAATTACGATAAACTAAGGCAATTCAAGTCCCTAGTAGTCC
TTAACTACATAATTCATAGTGAACGAAATAATAATATTAAGTAATAGACAAGCTAAAGTG
CGATAGAAAGAGAGAATTTTGTTAATTGAAATTCATCAACAATAGAAATTTCTTTATTAT
CAAATTACATGAGAATTTTGGCTAACTCGGGCATTTTGCACTTCATAGTTTTATGAGTTA
ATCATTGTCATGGCCAATTTAAATTTTCAACAACCGCCACGGATTCCATCAGCGTCACTG
ACACGAAACACGAATAGCGGATTTACTACGTCTAATTCAATTTCGGGAAATGTGACGCCT
ACGTCCTCGTTGATGTTTCAATCTCAGCAGCAGAATCAGCCTCCAAGTAATTCCAATCAA
TTTGTGACGCAGTCTGGCCAGCAGCAGCAAAATCAACAGCTATCGCCAAATCGAATCGGT
GCTGCGAATTTAAGTGGTGGAGTAGGCAATAGTGGTGCGCCAATGAATAGAAGAATGTAT
CAAAACAACCCTTCTTCGATACAGCAGCGAGGCGCATTCGGATCAACAACAAGTTCTCTT
AATAATATGGGCTCCTTTATGCAATCACAAACGCGATATGGATCTCAAAGTGGCGGCATT
AATAATTTTCAATCAGTCTTCGGTTCAGCAGACTCAACTCCACCAACGCTTCTAGATATG
AGCGAATTTCCATCGCTGACGAATGCTCGTGGACAAAATGATCAACATTCAAATGTACTT
CCTGGCAGCAAACC
>g5763.t2 Gene=g5763 Length=181
MANLNFQQPPRIPSASLTRNTNSGFTTSNSISGNVTPTSSLMFQSQQQNQPPSNSNQFVT
QSGQQQQNQQLSPNRIGAANLSGGVGNSGAPMNRRMYQNNPSSIQQRGAFGSTTSSLNNM
GSFMQSQTRYGSQSGGINNFQSVFGSADSTPPTLLDMSEFPSLTNARGQNDQHSNVLPGS
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g5763.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - |
| g5763.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 181 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5763/g5763.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5763.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
