General information for g5783.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t10 | TSS | g5783.t10 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t10 | isoform | g5783.t10 | 11920828 | 11923002 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t10 | exon | g5783.t10.exon6 | 11922465 | 11923002 |
| chr_2 | g5783 | g5783.t10 | cds | g5783.t10.CDS6 | 11922465 | 11922785 |
| chr_2 | g5783 | g5783.t10 | TTS | g5783.t10 | 11923013 | 11923013 |
Sequences
>g5783.t10 Gene=g5783 Length=1753
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGATAATATTTGTAGGTTT
ATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAAT
AAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCAT
CCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCA
TACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCA
GAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAA
GGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAA
ATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAG
TCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCT
GCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCAC
GGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGC
GTTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGT
ACGAGGATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAA
CGAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAACAATCAGACAGTTCGAATG
ACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGAGTCGATACTTTAAA
CGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTTCTCGGT
GGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCTGGAAGC
TCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCATCGTCG
ACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAGAAACAA
AAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTGGTCAAATATTTGGA
ATGACACAAAAAAGTGATGGTAAGTCTAATGAAAAAGATGAGTCTAAAAATATTAAGACT
CAACGACCACAAGAAGAAGAAGAAGAAACTGCTTATGACAAAAAAATATTAAAAGAAAAG
CAGTCACAGTATAATTCGTTTTTTGTGCTCGGACTGCTTGGAATAATTATTACATGCATA
TTTTTATTGCGAAAGAAAGATGAAGAGACAATTGTTGATAGAACTCGAGATTATTATCTT
GAAAGAGAGATTGCTCGAAAATCACAGTCTGTATGAGTGTTGATTACTCACTAACAAAAT
TAGAAGCATTAATAAAAGTTAGTTAATTGACGAAATAGTAACGTTTTTGCAAAAACTTTC
TCTTATTCTAGGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTAACAGCGAGAATCCG
AGAAGTTTTAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGATGATGTAAAGAAGAG
AAATAAAATTTGA
>g5783.t10 Gene=g5783 Length=511
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHASKDNICRFIHVSSTSLQRKDYYSVLGVN
KSASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDTKRKEYDMFGQTS
EQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFDEADFSE
SRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQYCNGTG
VETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVENNQTVRM
TVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTIQIMPGS
SSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDTPGQIFG
MTQKSDGKSNEKDESKNIKTQRPQEEEEETAYDKKILKEKQSQYNSFFVLGLLGIIITCI
FLLRKKDEETIVDRTRDYYLEREIARKSQSV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g5783.t10 | CDD | cd06257 | DnaJ | 52 | 106 | 5.16776E-26 |
| 22 | g5783.t10 | CDD | cd10719 | DnaJ_zf | 216 | 276 | 1.48176E-19 |
| 23 | g5783.t10 | CDD | cd10747 | DnaJ_C | 277 | 396 | 2.27101E-41 |
| 15 | g5783.t10 | Gene3D | G3DSA:1.10.287.110 | - | 48 | 176 | 4.9E-35 |
| 17 | g5783.t10 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 190 | 301 | 1.0E-21 |
| 14 | g5783.t10 | Gene3D | G3DSA:2.10.230.10 | - | 216 | 276 | 1.0E-21 |
| 16 | g5783.t10 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 315 | 419 | 4.4E-25 |
| 6 | g5783.t10 | Hamap | MF_01152 | Chaperone protein DnaJ [dnaJ]. | 49 | 460 | 29.648449 |
| 28 | g5783.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 451 | - |
| 27 | g5783.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 451 | - |
| 4 | g5783.t10 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 436 | 1.5E-152 |
| 5 | g5783.t10 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 436 | 1.5E-152 |
| 7 | g5783.t10 | PRINTS | PR00625 | DnaJ domain signature | 54 | 72 | 8.3E-27 |
| 10 | g5783.t10 | PRINTS | PR00625 | DnaJ domain signature | 72 | 87 | 8.3E-27 |
| 8 | g5783.t10 | PRINTS | PR00625 | DnaJ domain signature | 89 | 109 | 8.3E-27 |
| 9 | g5783.t10 | PRINTS | PR00625 | DnaJ domain signature | 109 | 128 | 8.3E-27 |
| 3 | g5783.t10 | Pfam | PF00226 | DnaJ domain | 52 | 114 | 7.9E-27 |
| 1 | g5783.t10 | Pfam | PF01556 | DnaJ C terminal domain | 190 | 393 | 6.3E-28 |
| 2 | g5783.t10 | Pfam | PF00684 | DnaJ central domain | 216 | 276 | 3.6E-9 |
| 19 | g5783.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 463 | - |
| 20 | g5783.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 483 | - |
| 18 | g5783.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 484 | 511 | - |
| 26 | g5783.t10 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 94 | 113 | - |
| 30 | g5783.t10 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 52 | 117 | 24.024 |
| 29 | g5783.t10 | ProSiteProfiles | PS51188 | Zinc finger CR-type profile. | 203 | 281 | 19.7 |
| 25 | g5783.t10 | SMART | SM00271 | dnaj_3 | 51 | 109 | 8.5E-30 |
| 13 | g5783.t10 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 48 | 140 | 1.31E-30 |
| 11 | g5783.t10 | SUPERFAMILY | SSF57938 | DnaJ/Hsp40 cysteine-rich domain | 203 | 279 | 6.15E-16 |
| 12 | g5783.t10 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 318 | 404 | 8.76E-19 |
| 24 | g5783.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 483 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t10; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t10.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0031072 | heat shock protein binding | MF |
| GO:0009408 | response to heat | BP |
KEGG
Orthology
- This transcript has been annotated with K09504 (DnaJ homolog subfamily A member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
