Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5783 g5783.t12 TSS g5783.t12 11920795 11920795
chr_2 g5783 g5783.t12 isoform g5783.t12 11920828 11923002
chr_2 g5783 g5783.t12 exon g5783.t12.exon1 11920828 11920930
chr_2 g5783 g5783.t12 cds g5783.t12.CDS1 11920828 11920930
chr_2 g5783 g5783.t12 exon g5783.t12.exon2 11921110 11921312
chr_2 g5783 g5783.t12 cds g5783.t12.CDS2 11921110 11921312
chr_2 g5783 g5783.t12 exon g5783.t12.exon3 11921376 11921808
chr_2 g5783 g5783.t12 cds g5783.t12.CDS3 11921376 11921808
chr_2 g5783 g5783.t12 exon g5783.t12.exon4 11921868 11922011
chr_2 g5783 g5783.t12 cds g5783.t12.CDS4 11921868 11922011
chr_2 g5783 g5783.t12 exon g5783.t12.exon5 11922075 11922454
chr_2 g5783 g5783.t12 cds g5783.t12.CDS5 11922075 11922451
chr_2 g5783 g5783.t12 exon g5783.t12.exon6 11922881 11923002
chr_2 g5783 g5783.t12 TTS g5783.t12 11923013 11923013

Sequences

>g5783.t12 Gene=g5783 Length=1385
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGATAATATTTGTAGGTTT
ATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAAT
AAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCAT
CCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCA
TACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCA
GAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAA
GGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAA
ATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAG
TCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCT
GCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCAC
GGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGC
GTTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGT
ACGAGGATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAA
CGAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAACAATCAGACAGTTCGAATG
ACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGAGTCGATACTTTAAA
CGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTTCTCGGT
GGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCTGGAAGC
TCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCATCGTCG
ACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAGAAACAA
AAGGCAATCATTCAGGTTGGTTTAAGAAATTTATTTAATACGAAAATTACAAATAAATGA
AATGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTAACAGCGAGAATCCGAGAAGTTT
TAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGATGATGTAAAGAAGAGAAATAAAA
TTTGA

>g5783.t12 Gene=g5783 Length=419
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHASKDNICRFIHVSSTSLQRKDYYSVLGVN
KSASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDTKRKEYDMFGQTS
EQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFDEADFSE
SRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQYCNGTG
VETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVENNQTVRM
TVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTIQIMPGS
SSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQVGLRNLFNTKITNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g5783.t12 CDD cd06257 DnaJ 52 106 5.27042E-27
19 g5783.t12 CDD cd10719 DnaJ_zf 216 276 5.91835E-19
20 g5783.t12 CDD cd10747 DnaJ_C 277 396 2.16814E-42
15 g5783.t12 Gene3D G3DSA:1.10.287.110 - 48 177 3.7E-35
16 g5783.t12 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 190 301 7.0E-22
14 g5783.t12 Gene3D G3DSA:2.10.230.10 - 216 276 7.0E-22
17 g5783.t12 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 315 415 8.8E-24
6 g5783.t12 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 49 419 29.24683
4 g5783.t12 PANTHER PTHR44145 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 38 404 3.3E-146
5 g5783.t12 PANTHER PTHR44145:SF3 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 38 404 3.3E-146
7 g5783.t12 PRINTS PR00625 DnaJ domain signature 54 72 4.2E-27
10 g5783.t12 PRINTS PR00625 DnaJ domain signature 72 87 4.2E-27
8 g5783.t12 PRINTS PR00625 DnaJ domain signature 89 109 4.2E-27
9 g5783.t12 PRINTS PR00625 DnaJ domain signature 109 128 4.2E-27
3 g5783.t12 Pfam PF00226 DnaJ domain 52 114 5.9E-27
1 g5783.t12 Pfam PF01556 DnaJ C terminal domain 190 393 4.0E-28
2 g5783.t12 Pfam PF00684 DnaJ central domain 216 276 2.7E-9
22 g5783.t12 ProSitePatterns PS00636 Nt-dnaJ domain signature. 94 113 -
24 g5783.t12 ProSiteProfiles PS50076 dnaJ domain profile. 52 117 24.024
23 g5783.t12 ProSiteProfiles PS51188 Zinc finger CR-type profile. 203 281 19.7
21 g5783.t12 SMART SM00271 dnaj_3 51 109 8.5E-30
13 g5783.t12 SUPERFAMILY SSF46565 Chaperone J-domain 48 140 1.09E-30
11 g5783.t12 SUPERFAMILY SSF57938 DnaJ/Hsp40 cysteine-rich domain 203 279 4.58E-16
12 g5783.t12 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 318 404 6.28E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5783/g5783.t12; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t12.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0031072 heat shock protein binding MF
GO:0009408 response to heat BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values