General information for g5783.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t17 | TSS | g5783.t17 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t17 | isoform | g5783.t17 | 11920828 | 11923002 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon1 | 11920828 | 11920934 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS1 | 11920919 | 11920934 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon6 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS6 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t17 | exon | g5783.t17.exon7 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t17 | cds | g5783.t17.CDS7 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t17 | TTS | g5783.t17 | 11923013 | 11923013 |
Sequences
>g5783.t17 Gene=g5783 Length=1405
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGGTATATAATATTTGTAG
GTTTATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGT
CAATAAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATA
TCATCCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGA
AGCATACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAAC
ATCAGAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACC
ACAAGGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAG
AAAAATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTC
AGAGTCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCA
AGCTGCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATG
TCACGGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAAC
TGGCGTTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCA
AGGTACGAGGATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGT
GCAACGAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAACAATCAGACAGTTCG
AATGACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGAGTCGATACTT
TAAACGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTTCT
CGGTGGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCTGG
AAGCTCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCATC
GTCGACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAGAA
ACAAAAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTGGTCAAATATT
TGGAATGACACAAAAAAGTGATGGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTAAC
AGCGAGAATCCGAGAAGTTTTAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGATGA
TGTAAAGAAGAGAAATAAAATTTGA
>g5783.t17 Gene=g5783 Length=437
MLVKVYNICRFIHVSSTSLQRKDYYSVLGVNKSASAKDIKKAYYELAKKYHPDTNKDDPN
ASKKFQEVSEAYEVLSDDTKRKEYDMFGQTSEQMGRQGGSGAGGFSGYGPQGFSQHWQYR
STIDPEELFRKIFGDFKGGGMGGFDEADFSESRFGFGGAQEVIMNLTFSQAARGVNKDID
VNVVDTCLKCHGSRCEPGTKPGKCQYCNGTGVETISTGPFVMRSTCRYCQGTRMYIKYPC
IECDGKGQTVQRKRVTVSVPPGVENNQTVRMTVGNKELFVTFKVEKSRYFKRDGNDVHTD
AEISLSQAVLGGTIRIQGVYEDQTIQIMPGSSSHQVITLKGKGIKRVNSSSTGDHYVHLK
IVIPKKLTEKQKAIIQAYAELEKDTPGQIFGMTQKSDGLKESYSEPIELTARIREVLKEK
KAIEESTDDDVKKRNKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g5783.t17 | CDD | cd06257 | DnaJ | 23 | 77 | 8.49691E-27 |
| 19 | g5783.t17 | CDD | cd10719 | DnaJ_zf | 187 | 247 | 2.44655E-19 |
| 20 | g5783.t17 | CDD | cd10747 | DnaJ_C | 248 | 367 | 1.86497E-41 |
| 15 | g5783.t17 | Gene3D | G3DSA:1.10.287.110 | - | 20 | 148 | 5.5E-35 |
| 17 | g5783.t17 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 161 | 272 | 7.6E-22 |
| 14 | g5783.t17 | Gene3D | G3DSA:2.10.230.10 | - | 187 | 247 | 7.6E-22 |
| 16 | g5783.t17 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 286 | 390 | 3.4E-25 |
| 6 | g5783.t17 | Hamap | MF_01152 | Chaperone protein DnaJ [dnaJ]. | 20 | 416 | 29.628368 |
| 4 | g5783.t17 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 9 | 401 | 7.5E-153 |
| 5 | g5783.t17 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 9 | 401 | 7.5E-153 |
| 9 | g5783.t17 | PRINTS | PR00625 | DnaJ domain signature | 25 | 43 | 4.8E-27 |
| 8 | g5783.t17 | PRINTS | PR00625 | DnaJ domain signature | 43 | 58 | 4.8E-27 |
| 10 | g5783.t17 | PRINTS | PR00625 | DnaJ domain signature | 60 | 80 | 4.8E-27 |
| 7 | g5783.t17 | PRINTS | PR00625 | DnaJ domain signature | 80 | 99 | 4.8E-27 |
| 3 | g5783.t17 | Pfam | PF00226 | DnaJ domain | 23 | 85 | 6.3E-27 |
| 1 | g5783.t17 | Pfam | PF01556 | DnaJ C terminal domain | 161 | 364 | 4.4E-28 |
| 2 | g5783.t17 | Pfam | PF00684 | DnaJ central domain | 187 | 247 | 2.9E-9 |
| 22 | g5783.t17 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 65 | 84 | - |
| 24 | g5783.t17 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 23 | 88 | 24.024 |
| 23 | g5783.t17 | ProSiteProfiles | PS51188 | Zinc finger CR-type profile. | 174 | 252 | 19.7 |
| 21 | g5783.t17 | SMART | SM00271 | dnaj_3 | 22 | 80 | 8.5E-30 |
| 13 | g5783.t17 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 19 | 111 | 1.07E-30 |
| 11 | g5783.t17 | SUPERFAMILY | SSF57938 | DnaJ/Hsp40 cysteine-rich domain | 174 | 250 | 4.84E-16 |
| 12 | g5783.t17 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 289 | 375 | 6.8E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t17; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t17.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0031072 | heat shock protein binding | MF |
| GO:0009408 | response to heat | BP |
KEGG
Orthology
- This transcript has been annotated with K09504 (DnaJ homolog subfamily A member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed