General information for g5783.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t18 | TSS | g5783.t18 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t18 | isoform | g5783.t18 | 11920828 | 11923002 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon6 | 11922465 | 11922522 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS6 | 11922465 | 11922522 |
| chr_2 | g5783 | g5783.t18 | exon | g5783.t18.exon7 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t18 | cds | g5783.t18.CDS7 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t18 | TTS | g5783.t18 | 11923013 | 11923013 |
Sequences
>g5783.t18 Gene=g5783 Length=1395
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGATAATATTTGTAGGTTT
ATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAAT
AAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCAT
CCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCA
TACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCA
GAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAA
GGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAA
ATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAG
TCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCT
GCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCAC
GGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGC
GTTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGT
ACGAGGATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAA
CGAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAACAATCAGACAGTTCGAATG
ACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGAGTCGATACTTTAAA
CGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTTCTCGGT
GGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCTGGAAGC
TCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCATCGTCG
ACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAGAAACAA
AAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTGGTCAAATATTTGGA
ATGACACAAAAAAGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTAACAGCGAGAATC
CGAGAAGTTTTAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGATGATGTAAAGAAG
AGAAATAAAATTTGA
>g5783.t18 Gene=g5783 Length=464
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHASKDNICRFIHVSSTSLQRKDYYSVLGVN
KSASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDTKRKEYDMFGQTS
EQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFDEADFSE
SRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQYCNGTG
VETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVENNQTVRM
TVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTIQIMPGS
SSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDTPGQIFG
MTQKSLKESYSEPIELTARIREVLKEKKAIEESTDDDVKKRNKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g5783.t18 | CDD | cd06257 | DnaJ | 52 | 106 | 2.76531E-26 |
| 19 | g5783.t18 | CDD | cd10719 | DnaJ_zf | 216 | 276 | 1.65377E-19 |
| 20 | g5783.t18 | CDD | cd10747 | DnaJ_C | 277 | 396 | 1.06646E-41 |
| 15 | g5783.t18 | Gene3D | G3DSA:1.10.287.110 | - | 48 | 177 | 4.5E-35 |
| 17 | g5783.t18 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 190 | 301 | 8.5E-22 |
| 14 | g5783.t18 | Gene3D | G3DSA:2.10.230.10 | - | 216 | 276 | 8.5E-22 |
| 16 | g5783.t18 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 314 | 418 | 3.8E-25 |
| 6 | g5783.t18 | Hamap | MF_01152 | Chaperone protein DnaJ [dnaJ]. | 49 | 429 | 29.620335 |
| 4 | g5783.t18 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 429 | 1.3E-151 |
| 5 | g5783.t18 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 429 | 1.3E-151 |
| 7 | g5783.t18 | PRINTS | PR00625 | DnaJ domain signature | 54 | 72 | 5.9E-27 |
| 10 | g5783.t18 | PRINTS | PR00625 | DnaJ domain signature | 72 | 87 | 5.9E-27 |
| 8 | g5783.t18 | PRINTS | PR00625 | DnaJ domain signature | 89 | 109 | 5.9E-27 |
| 9 | g5783.t18 | PRINTS | PR00625 | DnaJ domain signature | 109 | 128 | 5.9E-27 |
| 3 | g5783.t18 | Pfam | PF00226 | DnaJ domain | 52 | 114 | 6.9E-27 |
| 1 | g5783.t18 | Pfam | PF01556 | DnaJ C terminal domain | 190 | 393 | 5.1E-28 |
| 2 | g5783.t18 | Pfam | PF00684 | DnaJ central domain | 216 | 276 | 3.1E-9 |
| 22 | g5783.t18 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 94 | 113 | - |
| 24 | g5783.t18 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 52 | 117 | 24.024 |
| 23 | g5783.t18 | ProSiteProfiles | PS51188 | Zinc finger CR-type profile. | 203 | 281 | 19.7 |
| 21 | g5783.t18 | SMART | SM00271 | dnaj_3 | 51 | 109 | 8.5E-30 |
| 13 | g5783.t18 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 48 | 140 | 1.44E-30 |
| 11 | g5783.t18 | SUPERFAMILY | SSF57938 | DnaJ/Hsp40 cysteine-rich domain | 203 | 279 | 5.36E-16 |
| 12 | g5783.t18 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 318 | 404 | 7.46E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t18; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t18.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0031072 | heat shock protein binding | MF |
| GO:0009408 | response to heat | BP |
KEGG
Orthology
- This transcript has been annotated with K09504 (DnaJ homolog subfamily A member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed