General information for g5783.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t2 | TSS | g5783.t2 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t2 | isoform | g5783.t2 | 11920828 | 11921393 |
| chr_2 | g5783 | g5783.t2 | exon | g5783.t2.exon1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t2 | cds | g5783.t2.CDS1 | 11920828 | 11920930 |
| chr_2 | g5783 | g5783.t2 | exon | g5783.t2.exon2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t2 | cds | g5783.t2.CDS2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t2 | exon | g5783.t2.exon3 | 11921376 | 11921393 |
| chr_2 | g5783 | g5783.t2 | cds | g5783.t2.CDS3 | 11921376 | 11921393 |
| chr_2 | g5783 | g5783.t2 | TTS | g5783.t2 | NA | NA |
Sequences
>g5783.t2 Gene=g5783 Length=324
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGATAATATTTGTAGGTTT
ATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAAT
AAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCAT
CCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCA
TACGAGGTGCTGAGTGATGATACA
>g5783.t2 Gene=g5783 Length=108
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHASKDNICRFIHVSSTSLQRKDYYSVLGVN
KSASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g5783.t2 | CDD | cd06257 | DnaJ | 52 | 106 | 0.000 |
| 8 | g5783.t2 | Gene3D | G3DSA:1.10.287.110 | - | 39 | 108 | 0.000 |
| 2 | g5783.t2 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 107 | 0.000 |
| 3 | g5783.t2 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 38 | 107 | 0.000 |
| 4 | g5783.t2 | PRINTS | PR00625 | DnaJ domain signature | 54 | 72 | 0.000 |
| 5 | g5783.t2 | PRINTS | PR00625 | DnaJ domain signature | 72 | 87 | 0.000 |
| 6 | g5783.t2 | PRINTS | PR00625 | DnaJ domain signature | 89 | 108 | 0.000 |
| 1 | g5783.t2 | Pfam | PF00226 | DnaJ domain | 52 | 107 | 0.000 |
| 11 | g5783.t2 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 52 | 108 | 19.794 |
| 10 | g5783.t2 | SMART | SM00271 | dnaj_3 | 51 | 108 | 0.000 |
| 7 | g5783.t2 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 48 | 107 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
