General information for g5783.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t29 | isoform | g5783.t29 | 11922078 | 11923002 |
| chr_2 | g5783 | g5783.t29 | exon | g5783.t29.exon1 | 11922078 | 11922406 |
| chr_2 | g5783 | g5783.t29 | cds | g5783.t29.CDS1 | 11922089 | 11922406 |
| chr_2 | g5783 | g5783.t29 | exon | g5783.t29.exon2 | 11922465 | 11923002 |
| chr_2 | g5783 | g5783.t29 | cds | g5783.t29.CDS2 | 11922465 | 11922785 |
| chr_2 | g5783 | g5783.t29 | TTS | g5783.t29 | 11923013 | 11923013 |
| chr_2 | g5783 | g5783.t29 | TSS | g5783.t29 | NA | NA |
Sequences
>g5783.t29 Gene=g5783 Length=867
AGACAGTTCGAATGACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGA
GTCGATACTTTAAACGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGC
AAGCAGTTCTCGGTGGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAA
TTATGCCTGGAAGCTCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTG
TTAATTCATCGTCGACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAAC
TAACTGAGAAACAAAAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTG
GTCAAATATTTGGAATGACACAAAAAAGTGATGGTAAGTCTAATGAAAAAGATGAGTCTA
AAAATATTAAGACTCAACGACCACAAGAAGAAGAAGAAGAAACTGCTTATGACAAAAAAA
TATTAAAAGAAAAGCAGTCACAGTATAATTCGTTTTTTGTGCTCGGACTGCTTGGAATAA
TTATTACATGCATATTTTTATTGCGAAAGAAAGATGAAGAGACAATTGTTGATAGAACTC
GAGATTATTATCTTGAAAGAGAGATTGCTCGAAAATCACAGTCTGTATGAGTGTTGATTA
CTCACTAACAAAATTAGAAGCATTAATAAAAGTTAGTTAATTGACGAAATAGTAACGTTT
TTGCAAAAACTTTCTCTTATTCTAGGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTA
ACAGCGAGAATCCGAGAAGTTTTAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGAT
GATGTAAAGAAGAGAAATAAAATTTGA
>g5783.t29 Gene=g5783 Length=212
MTVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTIQIMPG
SSSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDTPGQIF
GMTQKSDGKSNEKDESKNIKTQRPQEEEEETAYDKKILKEKQSQYNSFFVLGLLGIIITC
IFLLRKKDEETIVDRTRDYYLEREIARKSQSV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g5783.t29 | CDD | cd10747 | DnaJ_C | 8 | 97 | 1.29742E-33 |
| 5 | g5783.t29 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 15 | 120 | 7.5E-26 |
| 12 | g5783.t29 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 152 | - |
| 11 | g5783.t29 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 152 | - |
| 2 | g5783.t29 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 1 | 137 | 1.4E-42 |
| 3 | g5783.t29 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 1 | 137 | 1.4E-42 |
| 1 | g5783.t29 | Pfam | PF01556 | DnaJ C terminal domain | 6 | 94 | 6.5E-21 |
| 7 | g5783.t29 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 164 | - |
| 8 | g5783.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 184 | - |
| 6 | g5783.t29 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 185 | 212 | - |
| 4 | g5783.t29 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 19 | 105 | 1.7E-19 |
| 10 | g5783.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 184 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t29; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t29.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
