General information for g5783.t30
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t30 | isoform | g5783.t30 | 11922146 | 11928759 |
| chr_2 | g5783 | g5783.t30 | exon | g5783.t30.exon1 | 11922146 | 11922406 |
| chr_2 | g5783 | g5783.t30 | cds | g5783.t30.CDS1 | 11922260 | 11922406 |
| chr_2 | g5783 | g5783.t30 | exon | g5783.t30.exon2 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t30 | cds | g5783.t30.CDS2 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t30 | exon | g5783.t30.exon3 | 11928089 | 11928341 |
| chr_2 | g5783 | g5783.t30 | cds | g5783.t30.CDS3 | 11928089 | 11928207 |
| chr_2 | g5783 | g5783.t30 | exon | g5783.t30.exon4 | 11928496 | 11928759 |
| chr_2 | g5783 | g5783.t30 | TTS | g5783.t30 | 11928760 | 11928760 |
| chr_2 | g5783 | g5783.t30 | TSS | g5783.t30 | NA | NA |
Sequences
>g5783.t30 Gene=g5783 Length=842
TTTAAACGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTT
CTCGGTGGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCT
GGAAGCTCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCA
TCGTCGACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAG
AAACAAAAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTGGTCAAATA
TTTGGAATGACACAAAAAAGTGATGAATTTTTAAATTCGCTTAAATTTCGCTTAAGTGCG
AGTGCATCGCTATTTCCGGACATTTGTGTTGATGAGGATGATGTAGTGGTAGTTTGTGAT
GAAGAACTGCTTGATGTGATATGATGAAGTCGTTGTGAAGAGGAGGAAGCAGCTGTTGCT
TTACCGATACGCGAAGACGAATTCAATACCTAAAAGAATCACAAAAAAAAAGATAGAGAG
AACACAAAAAAAAAATTTATGATAAGTTCATCTATTTGATCACCCATCCGTCGCTATTAT
TTGTATATATACACATCACATATTATTTACTCTCTTCAAAGAATCTTACGCCCACGACTA
TTTCACATTATTCGAGAAAATTTTGAGACTTGTGTTGGGCAAGTAAAAAAGTCAAATTGC
GAAAGCAAAAGACACAAAGTGTTGAATGCAAAATTTTGTAAAATAATTGTGGTCGTGTAA
GTTTTGAGCATGAATCACACTCAAAAATAAACAACAAATTCTCAGAATCGAGCTTTCTCA
CC
>g5783.t30 Gene=g5783 Length=109
MPGSSSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDTPG
QIFGMTQKSDEFLNSLKFRLSASASLFPDICVDEDDVVVVCDEELLDVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g5783.t30 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 1 | 69 | 0 |
| 1 | g5783.t30 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 2 | 71 | 0 |
| 2 | g5783.t30 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 2 | 71 | 0 |
| 3 | g5783.t30 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 2 | 48 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t30; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t30.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
