Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5783 g5783.t5 TSS g5783.t5 11920795 11920795
chr_2 g5783 g5783.t5 isoform g5783.t5 11920828 11921869
chr_2 g5783 g5783.t5 exon g5783.t5.exon1 11920828 11920930
chr_2 g5783 g5783.t5 cds g5783.t5.CDS1 11920828 11920930
chr_2 g5783 g5783.t5 exon g5783.t5.exon2 11921110 11921312
chr_2 g5783 g5783.t5 cds g5783.t5.CDS2 11921110 11921312
chr_2 g5783 g5783.t5 exon g5783.t5.exon3 11921376 11921808
chr_2 g5783 g5783.t5 cds g5783.t5.CDS3 11921376 11921808
chr_2 g5783 g5783.t5 exon g5783.t5.exon4 11921868 11921869
chr_2 g5783 g5783.t5 cds g5783.t5.CDS4 11921868 11921869
chr_2 g5783 g5783.t5 TTS g5783.t5 11922841 11922841

Sequences

>g5783.t5 Gene=g5783 Length=741
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGATAATATTTGTAGGTTT
ATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAAT
AAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCAT
CCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCA
TACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCA
GAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAA
GGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAA
ATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAG
TCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCT
GCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCAC
GGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGC
GTTGAAACTATTTCGACTGGG

>g5783.t5 Gene=g5783 Length=247
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHASKDNICRFIHVSSTSLQRKDYYSVLGVN
KSASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDTKRKEYDMFGQTS
EQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFDEADFSE
SRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQYCNGTG
VETISTG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g5783.t5 CDD cd06257 DnaJ 52 106 4.7493E-27
13 g5783.t5 CDD cd10719 DnaJ_zf 216 247 9.30656E-9
11 g5783.t5 Gene3D G3DSA:1.10.287.110 - 48 177 5.5E-35
10 g5783.t5 Gene3D G3DSA:2.10.230.10 - 203 247 4.4E-7
2 g5783.t5 PANTHER PTHR44145 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 38 247 2.3E-75
3 g5783.t5 PANTHER PTHR44145:SF3 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 38 247 2.3E-75
4 g5783.t5 PRINTS PR00625 DnaJ domain signature 54 72 7.3E-28
7 g5783.t5 PRINTS PR00625 DnaJ domain signature 72 87 7.3E-28
5 g5783.t5 PRINTS PR00625 DnaJ domain signature 89 109 7.3E-28
6 g5783.t5 PRINTS PR00625 DnaJ domain signature 109 128 7.3E-28
1 g5783.t5 Pfam PF00226 DnaJ domain 52 114 2.5E-27
14 g5783.t5 ProSitePatterns PS00636 Nt-dnaJ domain signature. 94 113 -
16 g5783.t5 ProSiteProfiles PS50076 dnaJ domain profile. 52 117 24.024
15 g5783.t5 SMART SM00271 dnaj_3 51 109 8.5E-30
9 g5783.t5 SUPERFAMILY SSF46565 Chaperone J-domain 48 141 5.63E-31
8 g5783.t5 SUPERFAMILY SSF57938 DnaJ/Hsp40 cysteine-rich domain 203 244 5.23E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5783/g5783.t5; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t5.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051082 unfolded protein binding MF
GO:0031072 heat shock protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values