Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5783 g5783.t6 TSS g5783.t6 11920795 11920795
chr_2 g5783 g5783.t6 isoform g5783.t6 11920828 11922009
chr_2 g5783 g5783.t6 exon g5783.t6.exon1 11920828 11921312
chr_2 g5783 g5783.t6 exon g5783.t6.exon2 11921376 11921808
chr_2 g5783 g5783.t6 cds g5783.t6.CDS1 11921412 11921808
chr_2 g5783 g5783.t6 exon g5783.t6.exon3 11921868 11922009
chr_2 g5783 g5783.t6 cds g5783.t6.CDS2 11921868 11922007
chr_2 g5783 g5783.t6 TTS g5783.t6 11923013 11923013

Sequences

>g5783.t6 Gene=g5783 Length=1060
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAGTAAAGGTATGTATTAGGCTCTA
TAAAACAAGAAAGGATATAAATAATTTTTATTATTTATTGCATCATTTTTGAGTCTCATT
TTTATTTTATTCAAAAATAGGTTGGAAATTATCAATATATGAAACAAACTGAACTTTAAA
CATGTATAATAACTTTTAAATACTCTTTTCTTTGCCTTTCAGATAATATTTGTAGGTTTA
TTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAATA
AATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCATC
CAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCAT
ACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCAG
AACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAAG
GATTCAGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAAA
TATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAGT
CGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCTG
CTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCACG
GTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGCG
TTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGTA
CGAGGATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAAC
GAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAA

>g5783.t6 Gene=g5783 Length=179
MFGQTSEQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFD
EADFSESRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQ
YCNGTGVETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g5783.t6 CDD cd10719 DnaJ_zf 102 162 0.0
5 g5783.t6 Gene3D G3DSA:2.10.230.10 - 98 166 0.0
2 g5783.t6 PANTHER PTHR44145 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 8 179 0.0
3 g5783.t6 PANTHER PTHR44145:SF3 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 8 179 0.0
1 g5783.t6 Pfam PF00684 DnaJ central domain 102 162 0.0
6 g5783.t6 ProSiteProfiles PS51188 Zinc finger CR-type profile. 89 167 19.7
4 g5783.t6 SUPERFAMILY SSF57938 DnaJ/Hsp40 cysteine-rich domain 89 165 0.0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5783/g5783.t6; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t6.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051082 unfolded protein binding MF
GO:0031072 heat shock protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed