General information for g5804.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Collagen-like protein 2.
Parent gene
- The parent gene g5804 is located on chr_2: 11993599..12003258 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5804 | g5804.t1 | isoform | g5804.t1 | 11992984 | 12003258 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon1 | 11992984 | 11993049 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS1 | 11992984 | 11993049 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon2 | 11993211 | 11993263 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS2 | 11993211 | 11993263 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon3 | 11993394 | 11993503 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS3 | 11993394 | 11993503 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon4 | 11993599 | 11993650 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS4 | 11993599 | 11993650 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon5 | 11993728 | 11993777 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS5 | 11993728 | 11993777 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon6 | 11994368 | 11994437 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS6 | 11994368 | 11994437 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon7 | 11994497 | 11994566 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS7 | 11994497 | 11994566 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon8 | 11994741 | 11994803 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS8 | 11994741 | 11994803 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon9 | 11994881 | 11994924 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS9 | 11994881 | 11994924 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon10 | 11995056 | 11995136 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS10 | 11995056 | 11995136 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon11 | 11995260 | 11995319 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS11 | 11995260 | 11995319 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon12 | 11995387 | 11995422 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS12 | 11995387 | 11995422 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon13 | 11995478 | 11995539 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS13 | 11995478 | 11995539 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon14 | 11995606 | 11995633 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS14 | 11995606 | 11995633 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon15 | 11995699 | 11995734 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS15 | 11995699 | 11995734 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon16 | 11995800 | 11995872 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS16 | 11995800 | 11995872 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon17 | 11996004 | 11996056 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS17 | 11996004 | 11996056 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon18 | 11996139 | 11996192 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS18 | 11996139 | 11996192 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon19 | 11996260 | 11996340 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS19 | 11996260 | 11996340 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon20 | 11996427 | 11996490 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS20 | 11996427 | 11996490 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon21 | 11996552 | 11996597 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS21 | 11996552 | 11996597 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon22 | 11996672 | 11996756 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS22 | 11996672 | 11996756 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon23 | 11996866 | 11996955 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS23 | 11996866 | 11996955 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon24 | 11997048 | 11997092 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS24 | 11997048 | 11997092 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon25 | 11997323 | 11997358 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS25 | 11997323 | 11997358 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon26 | 11998758 | 11998794 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS26 | 11998758 | 11998794 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon27 | 11998857 | 11998879 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS27 | 11998857 | 11998879 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon28 | 11998986 | 11999058 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS28 | 11998986 | 11999058 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon29 | 11999129 | 11999243 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS29 | 11999129 | 11999243 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon30 | 12000496 | 12000622 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS30 | 12000496 | 12000622 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon31 | 12000724 | 12000777 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS31 | 12000724 | 12000777 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon32 | 12000847 | 12000882 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS32 | 12000847 | 12000882 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon33 | 12000978 | 12001099 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS33 | 12000978 | 12001099 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon34 | 12001281 | 12001362 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS34 | 12001281 | 12001362 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon35 | 12001458 | 12001503 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS35 | 12001458 | 12001503 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon36 | 12001602 | 12001663 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS36 | 12001602 | 12001663 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon37 | 12001728 | 12001763 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS37 | 12001728 | 12001763 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon38 | 12001829 | 12001838 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS38 | 12001829 | 12001838 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon39 | 12001919 | 12001943 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS39 | 12001919 | 12001943 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon40 | 12002071 | 12002128 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS40 | 12002071 | 12002128 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon41 | 12002198 | 12002215 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS41 | 12002198 | 12002215 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon42 | 12002297 | 12002357 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS42 | 12002297 | 12002357 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon43 | 12002423 | 12002477 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS43 | 12002423 | 12002477 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon44 | 12002858 | 12002912 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS44 | 12002858 | 12002912 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon45 | 12002994 | 12003054 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS45 | 12002994 | 12003054 |
| chr_2 | g5804 | g5804.t1 | exon | g5804.t1.exon46 | 12003229 | 12003258 |
| chr_2 | g5804 | g5804.t1 | cds | g5804.t1.CDS46 | 12003229 | 12003258 |
| chr_2 | g5804 | g5804.t1 | TSS | g5804.t1 | NA | NA |
| chr_2 | g5804 | g5804.t1 | TTS | g5804.t1 | NA | NA |
Sequences
>g5804.t1 Gene=g5804 Length=2694
ATGGGAAGAAGAGGAATTCCAGGAGAACAAGGACCACCGGGTGATCCTGGTTTTGATGGA
GAAAGAGGAAGACAAGGAACCTCAGAAAAAGGTCAAAATGGAGACGATGGAGAAGCAGGG
CCAATTGGGCCTCATGGTCCTCCAGGGTATGCTGGTGCTCCTGGTCCAAAAGGGCAAAAA
GGTTTTAGAGGTGAAGATGTGATTGGAATTAAAGGAGAATTGGGAGAGCCAGGTAGAGGT
GGTTTTGCAGATGGTTTACCAGGTCCAAGAGGTGAACCAGGTCTGCCAGGTGATAAAGGT
TTACCAGGAATTGGCTTCAATATCACTGGTCCACCTGGTCCTGATGGCTTACCAGGAAAG
CAAGGACCACCAGGTGATCCCGGTTTTGATGGACTTGATGGAGAAAAAGGTGATCCTGGT
CCAAGAGGTGATGACTGCGGTTATTGTCCGCCAGGTCTTCCAGGATTGAAAGGTGAACGA
GGTGAAGGTGGAAGAAGAGGATTTCCTGGTTTACAAGGAAACAGAGGTCTTCCAGGTGAA
AGAGGAAATAAAGGAGAAAAAGGAAGAGATGGACTTCCAGGATATGAAGGTTTAAAAGGT
GTTGCTGGTCAACATGGATTGCCCGGTATACAAGGTCCAAAAGGAAGAAAAGGAATGGTA
ATTGAAGTCGGATCACAACCAAAACCAGAAATTGGTGAAACTGGAGAGGTTGGCTACCCA
GGCCCTCAAGGACCAGACGGTGATCAAGGTCTCGATGGCGAACCAGGATTAGACGGAGAA
ATAGGAGATAGAGGCTATCCAGGTTTAGAAGGCCTCCCAGGATTACCTGGAAAAAATGGA
ACAGATGGATTTAATGGAAGAGATGGAAGAAAAGGTGAAAAAGCAGACTTTTATGACGAA
GGAGGTGAAACAGGAGAAGCTGGAATTCATGGAAGAAGAGGTGAAAGAGGGGACCGTGGT
GAAAGAGGTGAAAAAGGAGAAATGGGATACGTTCCACCACTTTTAATTGACAAGAGAGGC
TTCAAAGGTGATAGAGGTCCTGATGGACTTCCGGGAAATAAAGGAATAAAAGGAGACGAA
GGGGATCGAGGAGAAAGAGGTGAAGACGGAGAAGTTGGTCCAAGAGGTATTCCTGGTGAA
ATCAGAGAGGGAGCTCCAGGGCCAAAAGGATACATTGGATTACCAGGAAATTATGGACCA
AGAGGAGAGGATGGTTTACCAGGTCTTCCGGGTGAAGAAGGACTTCCAGGCCTTCCCGGA
ATCAAAGGTTCAAGAGGTGACCCAGGTGCTGCACTTTTATATGGTGAAATGGGCCCAGAC
GGTGAAGAAGGTCCTGATGGTGAAAAAGGAGAAAAAGGTTTCAGAGGTCAAATAGGTATT
AGAGGAATACCAGGTATAAAAGGATTAAAAGGTGAAAAAGGAAATATGGGCCTTGAAGGA
GCCATTGGTATTCAAGGAAACAAGGGTGCTCGTGGTGATATTGTTTATGGTGATAGAGGT
CCTGAAGGCCTTCCTGGTTTGGATGGAAGAAATGGCCTATTCGGAATGAAAGGTGAAAAA
GGAGATGAAGGTTTAGTTGGTGCTAGAGGAGCAATAGGTCAACGAGGTGATGTTGGATTT
GAAGGAAGAATAGGCCAAGAAGGAGATATAGGTGATATCGGTGACACAGGTGCATATGGA
ATGATTGGACTGCCTGGAGATTTTGGACTTCCAGGTGAAAAAGGTGACATTGGAAGACAA
GGTATTCCTGGTGTTAGAGGACCAATGGGATTCGTTGGTCCAAAAGGTCAACCAGGAGAT
AAGGGACTTCCAGGTTACCCTGGAAGAAACGGCCTCAAAGGAAAAAGAGGTGATTATGGT
CCACAAGGTTATCAAGGACAAAAAGGAGAGCCATCATTTAGTGGACCCAAAGGTGAAGTT
GGTGTACAAGGTCTCACAGGCCCAAGAGGATTAGATGGTATTCCAGGAAGAAGAGGTGCA
AAGGGCGAAGAAGGTGATGCAGGCCAAATTGTTGATGGTAGACCAGGTATCAAAGGTCTC
CCAGGAAAACCAGGCAGAGGAGGAAGAAGTGGTGCCAAAGGACAAAGAGGAGATTCAGGA
CCTTACGGAATCAAAGGCGAAAAAGGAGAAGAAGGAAGAGCTGGATTCCCAGGTTTGAAG
GGAAGAGATGGAAGAAGAGGATTCCCAGGAAATGCTGGCCCTATTGGTATCATAGGAGAA
ATTGGAATGCCAGGAGATTTCGGTGATATCGGTTACGGTTACAAAGGTGAAAGAGGTTTA
ACTGGACTGCCAGGATTGCCGGGTTTGCAAGGACCAATTGGTGATAAAGGTTTTCCAGGA
GCACCCGGTCCAGTTAGTCAAGGCTGGATGGCAAAAGGTGAACAAGGTGATGAAGGTCCA
ATTGGCTTCCAAGGTGTAAGAGGTGGATTTGGAAGACGAGGAGAAGTTGGTGATAGAGGT
CCACCAGGTGCATTTGGTGTTGATGGACGACCAGGTTTAAAAGGAATGATGGGTGAACGA
GGAATGAAAGGAGAACGTGGTCTTATTGCTGAATGGGCAGAACCTGGTGAAGAAGGTACT
CCTGGTTCTGACGGTTTTCCCGGAAGACAAGGAATGAGAGGACCAAAGGGCGCTCCAGGA
GATTATGGAGCAGATGGAGTTCCAGGTTTAATTGGTGAACAAGGAACTAGGTAA
>g5804.t1 Gene=g5804 Length=897
MGRRGIPGEQGPPGDPGFDGERGRQGTSEKGQNGDDGEAGPIGPHGPPGYAGAPGPKGQK
GFRGEDVIGIKGELGEPGRGGFADGLPGPRGEPGLPGDKGLPGIGFNITGPPGPDGLPGK
QGPPGDPGFDGLDGEKGDPGPRGDDCGYCPPGLPGLKGERGEGGRRGFPGLQGNRGLPGE
RGNKGEKGRDGLPGYEGLKGVAGQHGLPGIQGPKGRKGMVIEVGSQPKPEIGETGEVGYP
GPQGPDGDQGLDGEPGLDGEIGDRGYPGLEGLPGLPGKNGTDGFNGRDGRKGEKADFYDE
GGETGEAGIHGRRGERGDRGERGEKGEMGYVPPLLIDKRGFKGDRGPDGLPGNKGIKGDE
GDRGERGEDGEVGPRGIPGEIREGAPGPKGYIGLPGNYGPRGEDGLPGLPGEEGLPGLPG
IKGSRGDPGAALLYGEMGPDGEEGPDGEKGEKGFRGQIGIRGIPGIKGLKGEKGNMGLEG
AIGIQGNKGARGDIVYGDRGPEGLPGLDGRNGLFGMKGEKGDEGLVGARGAIGQRGDVGF
EGRIGQEGDIGDIGDTGAYGMIGLPGDFGLPGEKGDIGRQGIPGVRGPMGFVGPKGQPGD
KGLPGYPGRNGLKGKRGDYGPQGYQGQKGEPSFSGPKGEVGVQGLTGPRGLDGIPGRRGA
KGEEGDAGQIVDGRPGIKGLPGKPGRGGRSGAKGQRGDSGPYGIKGEKGEEGRAGFPGLK
GRDGRRGFPGNAGPIGIIGEIGMPGDFGDIGYGYKGERGLTGLPGLPGLQGPIGDKGFPG
APGPVSQGWMAKGEQGDEGPIGFQGVRGGFGRRGEVGDRGPPGAFGVDGRPGLKGMMGER
GMKGERGLIAEWAEPGEEGTPGSDGFPGRQGMRGPKGAPGDYGADGVPGLIGEQGTR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - |
| 21 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 189 | - |
| 26 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 326 | - |
| 25 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 326 | - |
| 22 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 385 | - |
| 27 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 376 | - |
| 23 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 727 | - |
| 20 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 720 | - |
| 28 | g5804.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 897 | - |
| 14 | g5804.t1 | PANTHER | PTHR24023:SF1005 | COLLAGEN ALPHA-1(IV) CHAIN | 2 | 468 | 4.3E-193 |
| 18 | g5804.t1 | PANTHER | PTHR24023 | COLLAGEN ALPHA | 2 | 468 | 4.3E-193 |
| 15 | g5804.t1 | PANTHER | PTHR24023:SF1005 | COLLAGEN ALPHA-1(IV) CHAIN | 340 | 703 | 4.3E-193 |
| 19 | g5804.t1 | PANTHER | PTHR24023 | COLLAGEN ALPHA | 340 | 703 | 4.3E-193 |
| 13 | g5804.t1 | PANTHER | PTHR24023:SF1005 | COLLAGEN ALPHA-1(IV) CHAIN | 447 | 772 | 4.3E-193 |
| 17 | g5804.t1 | PANTHER | PTHR24023 | COLLAGEN ALPHA | 447 | 772 | 4.3E-193 |
| 12 | g5804.t1 | PANTHER | PTHR24023:SF1005 | COLLAGEN ALPHA-1(IV) CHAIN | 673 | 896 | 4.3E-193 |
| 16 | g5804.t1 | PANTHER | PTHR24023 | COLLAGEN ALPHA | 673 | 896 | 4.3E-193 |
| 3 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 110 | 167 | 2.0E-7 |
| 2 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 161 | 218 | 8.2E-9 |
| 11 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 235 | 293 | 1.8E-10 |
| 5 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 340 | 379 | 1.9E-6 |
| 6 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 384 | 429 | 1.3E-7 |
| 9 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 435 | 492 | 3.9E-10 |
| 1 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 497 | 551 | 9.2E-9 |
| 8 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 673 | 727 | 2.6E-8 |
| 7 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 724 | 784 | 1.1E-6 |
| 10 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 793 | 847 | 5.4E-8 |
| 4 | g5804.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 855 | 896 | 1.8E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5804/g5804.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5804.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06237 (collagen type IV alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
