General information for g5895.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol hexakisphosphate kinase 3.
Parent gene
- The parent gene g5895 is located on chr_2: 12638923..12640069 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5895 | g5895.t4 | TSS | g5895.t4 | 12632701 | 12632701 |
| chr_2 | g5895 | g5895.t4 | isoform | g5895.t4 | 12633204 | 12640069 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon1 | 12633204 | 12633703 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon2 | 12634426 | 12634546 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon3 | 12635436 | 12635512 |
| chr_2 | g5895 | g5895.t4 | cds | g5895.t4.CDS1 | 12635437 | 12635512 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon4 | 12637650 | 12637730 |
| chr_2 | g5895 | g5895.t4 | cds | g5895.t4.CDS2 | 12637650 | 12637730 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon5 | 12637861 | 12638161 |
| chr_2 | g5895 | g5895.t4 | cds | g5895.t4.CDS3 | 12637861 | 12638161 |
| chr_2 | g5895 | g5895.t4 | exon | g5895.t4.exon6 | 12638374 | 12640069 |
| chr_2 | g5895 | g5895.t4 | cds | g5895.t4.CDS4 | 12638374 | 12639526 |
| chr_2 | g5895 | g5895.t4 | TTS | g5895.t4 | 12640360 | 12640360 |
Sequences
>g5895.t4 Gene=g5895 Length=2776
ATGGTCTTAAATTTATTTCCAACACTTATGGATGAACTTCAAACGACAGCATTCTCGCTA
CCAATTACGAAATTCCACAACAATGATTCAACACAATTGAACTCATTTTTTAACAAAAAT
ACACAGAAAGATCCCGCCACAGCTGATCATCATTTACAACTTTGCAATAATAATAGTAGT
AATACTAGCACAGTTAACTCTGCAGTCACAGCAACCGCTCGCAAGAGTCTTTCTTCATCA
ACAAATCCTCTCAATGAATTTCTAAAGCCACACAGTATTTTATCGCAAAATAATTCATCA
GAGAGTGACGATGACGATAATTCAAATCATCATGATGAAATAAATTTGTATCCTTTATCC
AATCAAGTCGGTGGTCACACACGACTACTGCTTTTGAATGACAAGACTGTCATAAAGCCT
CTCAATTTTCGTGAATTGGAATTTTATCAAAACATTCCAGGAAATGATATTCAGCATTTT
GTTCCCAAGTATAAAGGTTTGTGTGATGCAATGTTCGACGACAGGCGAGCAGTTTGAAAA
ACGATACAGCCCAAATTTCAAAATTGATGAATCGTTGAGACGCCAAAGTTCAACGAAAAG
AAAACGCGATGAAGTTCTTAGAATGAAAATTCATAAAAATGGAAATGCAACTGAAGTACT
AAAAAGTATTTCTTCTTTAGACAACAGTAATAAGACATATTTTTTAATGTTGGAGAACAT
TACATCAAAATTTCAACAACCATGCATCTTGGACTTGAAAATGGGAACTCGTCAACACGG
TGATGACGCATCAGCTGAGAAAAAATCTAAACAAATGGCAAAGTGTGCAGCAAGCACAAG
TTCAAAGCTGGGTGTTCGTCTTTGTGGTCTTCAAAAGTATAATGTGCATAATAAGACCGT
CATAAAGCGTGACAAATATTGGGGGAGACAATTGTCAGAGCAGCAGTTTAAAAAAGCAAT
TCAAGATTTCTTCCATAATGGTGTGCGTTTACGTACTAAAGTTATTGAAAAAGTGCTGGC
ACGACTTGAAAAATTACATACTGTGATAGAACAACAGTCTAGCTACCGATTTTATTCATG
CTCGCTTCTATTAGTGTACGAGGGTAAAGATGTCGAGTCAGAACGTCTAGAGGCAATGAA
TTCTAATTATGATGCTGATATATCAAATTGTTCAGTCGATCACCACAATATGCAATTTAA
TAATGAAAATGATGAACACGATGTTGGTATTGGACATGAAGATGAATCAAATTCAGATCA
ATTCATGTCTGGTGATGAAACAAGGGCAAGAGATTCTGATAATCTCGAGCATATTGAGAG
AAAATTTCTTGATTTGCCAGAACATCGAGCGCCCTCGCCACATTCTATGGATTCATGGAT
TAATTATAGTAATAGTAGTGATGAATGTTCGACGTCACACGAAGTAATCGTTCGTAAAGG
TACAAAATTAAATTTACACGATGAAACTACACAAGATAATGACGATGTGGATGTTTACGA
TAAGATAAATTTCGTCAATGCCAAATCGATGACTTCGTCGTTTAAAAAAACAAAAATCGA
TGGTTCTTCATATCATCATCATCCCTCACAATCATCGCAATCATCTTCATTTGAAAACAC
TGCCAAAAATAACCATATATCTGCAGCAGTTAATATAACCAACTCCATTGAAACCACTAG
TGATCATCGACTTAAGCAATTTCCTGAAGATATAAAATTGACACAAACAAGCACAATAAC
AACAGCTGATGATTGCGAAAAAAATAAAGCACATGAAACAGATGATGGTATTGAAGTTGA
AGAAGAAGAAGAGGATGATGATCAGTTATCATCACTAAGCAGTAATATCGATACGATAAT
TGTAAGTGAGACAGGTGAAACGAAATTTTACAATGCGTCAGGCGAACAGGAAGAACATCC
AAGTTTAAAAAAGAAGAAATCCTGTGACAGTGTTGACAATAAAGGGAAAAACGAAATAAA
ATCTACAACAACATTTTCACATACAAACGGACATTCGAGCGTTAATAATAGTAATAAGAA
TGCCGTCTTTTCGCCACTTGTGGATGTTCGAATAATTGATTTTGCACATACAACCTTTAC
GACAAAAGAGCCCTCTCCATTTGTTGACGAGAACGAGGTCAAAAAAATTCATCACGGCCC
TGATGGAGGTTTTCTTACTGGAATTGCCAGTCTAAAACGTATTCTCTCCGAAATCGTTGT
TGAAGCCATTTAAGTAATCAATCTATTACACATATTTGCCATAATGAAACGATTATCGGC
AGGCAGGAAGCACAAAAGAGTGTGTTTTCACTCGGCTAAAAATATCTACAAGATTTATAG
CCATAAATAATCAATAAACCAGCTATTTTGATTCTTAAGTCAATATTAAGAGATTGGATT
AGCAGTCAGGAACAGAATGAATATAAAAATAAAATAAAGTCGACATATGTGTGTAAATTA
ATTTTGTTATCACAAACTCACAACAAACTGCAATCAGCTGATTCACAAGTACTGCTGTTG
TTTGAAACTCGCTTTCAAACTTATGAAGGTGTGAAGGTGAACACGAAACAAAACAGAAGC
AAGCACGAAAAGTTATTTTTTTCTCAAATATTTTTTTCCGCGCGCTCTCACTGTGAGAAA
TGGCAACAATGTTTCAATACATTTACTTATTACACATTTACATGTGCGACAAATCGACTG
TGTCTACCTAAGAAAATGATGATGATGCTGTTGATGAGAATGCAGGGTCAGAAAAATTTG
TCGACGATTGGCACTC
>g5895.t4 Gene=g5895 Length=536
MKIHKNGNATEVLKSISSLDNSNKTYFLMLENITSKFQQPCILDLKMGTRQHGDDASAEK
KSKQMAKCAASTSSKLGVRLCGLQKYNVHNKTVIKRDKYWGRQLSEQQFKKAIQDFFHNG
VRLRTKVIEKVLARLEKLHTVIEQQSSYRFYSCSLLLVYEGKDVESERLEAMNSNYDADI
SNCSVDHHNMQFNNENDEHDVGIGHEDESNSDQFMSGDETRARDSDNLEHIERKFLDLPE
HRAPSPHSMDSWINYSNSSDECSTSHEVIVRKGTKLNLHDETTQDNDDVDVYDKINFVNA
KSMTSSFKKTKIDGSSYHHHPSQSSQSSSFENTAKNNHISAAVNITNSIETTSDHRLKQF
PEDIKLTQTSTITTADDCEKNKAHETDDGIEVEEEEEDDDQLSSLSSNIDTIIVSETGET
KFYNASGEQEEHPSLKKKKSCDSVDNKGKNEIKSTTTFSHTNGHSSVNNSNKNAVFSPLV
DVRIIDFAHTTFTTKEPSPFVDENEVKKIHHGPDGGFLTGIASLKRILSEIVVEAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g5895.t4 | Gene3D | G3DSA:1.10.510.50 | - | 5 | 206 | 3.0E-56 |
| 9 | g5895.t4 | Gene3D | G3DSA:1.10.510.50 | - | 411 | 535 | 1.2E-5 |
| 8 | g5895.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 333 | - |
| 5 | g5895.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 404 | - |
| 6 | g5895.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 403 | - |
| 7 | g5895.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 443 | - |
| 2 | g5895.t4 | PANTHER | PTHR12400:SF21 | KINASE | 6 | 533 | 1.4E-80 |
| 3 | g5895.t4 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 6 | 533 | 1.4E-80 |
| 1 | g5895.t4 | Pfam | PF03770 | Inositol polyphosphate kinase | 27 | 528 | 3.4E-54 |
| 4 | g5895.t4 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 22 | 531 | 7.52E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5895/g5895.t4; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5895.t4.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K07756 (inositol-hexakisphosphate 5-kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
