General information for g5967.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g5967 is located on chr_2: 13096316..13100270 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5967 | g5967.t2 | TTS | g5967.t2 | 13096171 | 13096171 |
| chr_2 | g5967 | g5967.t2 | isoform | g5967.t2 | 13096316 | 13097239 |
| chr_2 | g5967 | g5967.t2 | exon | g5967.t2.exon1 | 13096316 | 13096436 |
| chr_2 | g5967 | g5967.t2 | cds | g5967.t2.CDS1 | 13096316 | 13096436 |
| chr_2 | g5967 | g5967.t2 | exon | g5967.t2.exon2 | 13096499 | 13096542 |
| chr_2 | g5967 | g5967.t2 | cds | g5967.t2.CDS2 | 13096499 | 13096542 |
| chr_2 | g5967 | g5967.t2 | exon | g5967.t2.exon3 | 13096605 | 13097058 |
| chr_2 | g5967 | g5967.t2 | cds | g5967.t2.CDS3 | 13096605 | 13097058 |
| chr_2 | g5967 | g5967.t2 | exon | g5967.t2.exon4 | 13097116 | 13097239 |
| chr_2 | g5967 | g5967.t2 | cds | g5967.t2.CDS4 | 13097116 | 13097216 |
| chr_2 | g5967 | g5967.t2 | TSS | g5967.t2 | NA | NA |
Sequences
>g5967.t2 Gene=g5967 Length=743
GTGGTAAAGGAGTTTTGCGCTCAATGATATGTGAAGCAAATTACACAGCTGAAGTTATAC
CTGTTGATCAAGCAATTAATGGAATTATTTCAATTGCTTATATTATGGGAACAATGAAAG
AGAGACCATCAAAAATTCCAGTTTATAATATAACATGCAGTGAAAAAAAGCGTGTCACGT
GGGGAACAGTTTTAAATGATGGAAAACGTATAAATTATGAATATCCCTTTGACGCTGGAT
TGTGGTACCCTAATGGAGATGTTACCATGAATTATGTGAAACATTATCTTACACTCTTCT
TTTGTCAATGGATTCCTGCACTTCTTATTGATTTTCTTATGCTCATTTTCTTCCAACCAA
GATTTATGATTCGTGTGCAGAAAAAGATTTTTATTGGTCTTGGAGTTTTACAATTTTTCA
CAACACGTAACTGGGATTTTAGATCAGAGAACTTTAAAGCAATTCATCATAAGTTGTCGC
CAGAAGAAAAAATTATTTTTAATACGAACACTGAAGAAGTTGAACAATTTGACTATTTGA
AAAGCATCATATTAGGTGGTCGTCAATATTGTTTAAAGGAACCATTAGAAAATTTACCAA
GAGCAAGATTTCACCAAAGAATTCAATATGTTGTTGATATTCTTTTTAAATGTTTCCTAA
TCTACTATATTGGCAAGTGGCTTCTTCGAATTACTGGACTTTTAGAAATACTCAATGGTC
TTTTAAGTACCAATGCAAACTAA
>g5967.t2 Gene=g5967 Length=239
MICEANYTAEVIPVDQAINGIISIAYIMGTMKERPSKIPVYNITCSEKKRVTWGTVLNDG
KRINYEYPFDAGLWYPNGDVTMNYVKHYLTLFFCQWIPALLIDFLMLIFFQPRFMIRVQK
KIFIGLGVLQFFTTRNWDFRSENFKAIHHKLSPEEKIIFNTNTEEVEQFDYLKSIILGGR
QYCLKEPLENLPRARFHQRIQYVVDILFKCFLIYYIGKWLLRITGLLEILNGLLSTNAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g5967.t2 | CDD | cd09071 | FAR_C | 93 | 184 | 2.56136E-27 |
| 2 | g5967.t2 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 1 | 223 | 2.6E-84 |
| 3 | g5967.t2 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 1 | 223 | 2.6E-84 |
| 1 | g5967.t2 | Pfam | PF03015 | Male sterility protein | 95 | 186 | 2.4E-24 |
| 6 | g5967.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 87 | - |
| 9 | g5967.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 5 | g5967.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 111 | 201 | - |
| 8 | g5967.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 221 | - |
| 7 | g5967.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 222 | 239 | - |
| 4 | g5967.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5967/g5967.t2; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5967.t2.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed