General information for g5991.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Maltase 2.
Parent gene
- The parent gene g5991 is located on chr_2: 13214225..13215116 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5991 | g5991.t21 | TSS | g5991.t21 | 13211467 | 13211467 |
| chr_2 | g5991 | g5991.t21 | isoform | g5991.t21 | 13212334 | 13214191 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon1 | 13212334 | 13212469 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS1 | 13212410 | 13212469 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon2 | 13212538 | 13212645 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS2 | 13212538 | 13212645 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon3 | 13212893 | 13213174 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS3 | 13212893 | 13213174 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon4 | 13213273 | 13213380 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS4 | 13213273 | 13213380 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon5 | 13213499 | 13213533 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS5 | 13213499 | 13213533 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon6 | 13213687 | 13213780 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS6 | 13213687 | 13213780 |
| chr_2 | g5991 | g5991.t21 | exon | g5991.t21.exon7 | 13213855 | 13214191 |
| chr_2 | g5991 | g5991.t21 | cds | g5991.t21.CDS7 | 13213855 | 13214190 |
| chr_2 | g5991 | g5991.t21 | TTS | g5991.t21 | 13214786 | 13214786 |
Sequences
>g5991.t21 Gene=g5991 Length=1100
ACAGCAATATTATTTGCATCAATTTACCAAACAGCAGCCAGATTTAAATTACCGCAATCC
AAAAGTTGTCGAGCGTATGAGTGACGTTTTGCGTTTTTGGCTAAAAAAAGGCGTTTATGG
ATTCCGCGTTGATGCTATTAATCACTTATTCGAAGTTGAGGATTTCATTGATGAGCCAGT
GAATGCATTTGATCCTGATCCAAAATCTTATGGACACTTGTTTCATTATTATACCGTAGA
TTTGAATGAAGTATATGATGTCGTCTATCAATGGCGAGATCTCCTCGACGACTTTAAAAA
GACGCACGGAGGCGAAACAAGAATAATGATGACAGAGGCTTATGCAAATATGAGTTTCGT
CATGAGATATTATGAAAATGATGAGGGCACTCGAAAAGGCTCTCATATACCATTCAACTT
TCTTATGATTTCTGATCTCAATGGCGACTCAACAGCACGAGATTTTGCACACACAATCAG
CAAGTGGATGAATTATATGCCGGTTGGATTTACCGCTAATTGGGTTATGGGCAATCACGA
CAATTCACGTGTAGCATCTCGCTATGGAGTCGAGCGTATTGATGCATTAAATACAATGCT
GCTGACTCTCGGTGGAGTTGGAATAACATATAATGGTGAAGAATTTGGAATGGTCGATTA
CAAGAACATCTCATGGAAAGACACACAAGATCCAGCAGCATGTAACACAAATCCAGATGT
TTATCAAAAATACTCTAGAGATCCAGAACGAACACCCTTCCAGTGGGACAATACAAAAAA
TGCTGGATTTTCAACAGCAGACAAAACATGGCTTCCTGTCAATCCCAATTATGTCGATCT
TAATTTAAAAGCAGAAAAAGAAGCCGAGCACAGTCATTTCAAGTTTTATCAAAAACTCAC
CAAATTACGTCAACATAAGACTTTTCAAAATGGCAATATAAAAGTCCAGGCACTCAGCAA
ATATGTGTTTGCATTTGTTCGGGAATTGCGTGATAGCGATACATTTGTTGTCGTAATTAA
TTTAGGAGCTAATGCAGAGGAAGTAAGTCTAAAACCTTTCAAAACACTCCATGATAAACT
AAAAGTTGTTGCTGCTGCTC
>g5991.t21 Gene=g5991 Length=341
MSDVLRFWLKKGVYGFRVDAINHLFEVEDFIDEPVNAFDPDPKSYGHLFHYYTVDLNEVY
DVVYQWRDLLDDFKKTHGGETRIMMTEAYANMSFVMRYYENDEGTRKGSHIPFNFLMISD
LNGDSTARDFAHTISKWMNYMPVGFTANWVMGNHDNSRVASRYGVERIDALNTMLLTLGG
VGITYNGEEFGMVDYKNISWKDTQDPAACNTNPDVYQKYSRDPERTPFQWDNTKNAGFST
ADKTWLPVNPNYVDLNLKAEKEAEHSHFKFYQKLTKLRQHKTFQNGNIKVQALSKYVFAF
VRELRDSDTFVVVINLGANAEEVSLKPFKTLHDKLKVVAAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g5991.t21 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 286 | 0.0000 |
| 2 | g5991.t21 | PANTHER | PTHR10357 | ALPHA-AMYLASE FAMILY MEMBER | 1 | 339 | 0.0000 |
| 3 | g5991.t21 | PANTHER | PTHR10357:SF177 | FI17312P1-RELATED | 1 | 339 | 0.0000 |
| 1 | g5991.t21 | Pfam | PF00128 | Alpha amylase, catalytic domain | 1 | 196 | 0.0000 |
| 5 | g5991.t21 | SMART | SM00642 | aamy | 6 | 225 | 0.0011 |
| 4 | g5991.t21 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 279 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5991/g5991.t21; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5991.t21.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
