Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6048 g6048.t1 TSS g6048.t1 13857773 13857773
chr_2 g6048 g6048.t1 isoform g6048.t1 13857847 13860906
chr_2 g6048 g6048.t1 exon g6048.t1.exon1 13857847 13858047
chr_2 g6048 g6048.t1 cds g6048.t1.CDS1 13857847 13858047
chr_2 g6048 g6048.t1 exon g6048.t1.exon2 13859186 13860135
chr_2 g6048 g6048.t1 cds g6048.t1.CDS2 13859186 13860135
chr_2 g6048 g6048.t1 exon g6048.t1.exon3 13860193 13860324
chr_2 g6048 g6048.t1 cds g6048.t1.CDS3 13860193 13860324
chr_2 g6048 g6048.t1 exon g6048.t1.exon4 13860379 13860504
chr_2 g6048 g6048.t1 cds g6048.t1.CDS4 13860379 13860504
chr_2 g6048 g6048.t1 exon g6048.t1.exon5 13860813 13860906
chr_2 g6048 g6048.t1 cds g6048.t1.CDS5 13860813 13860906
chr_2 g6048 g6048.t1 TTS g6048.t1 13861822 13861822

Sequences

>g6048.t1 Gene=g6048 Length=1503
ATGGCTCAACGTTTAAATTCAGTGCAAGAATTTTATAAAGACAAAACAATTTTCATCACA
GGTGGATCAGGATTTATGGGAAAAGTTCTAATTGAAAAGCTGCTTTATTCATGTTCTGAT
TTAAAGCAAATAATCATTTTGATGAGAGTTAAAAGAGGAAAGAACGAAATGGCAAGAGTT
AAAGAATTTGAAGCACTTCCTCTGTTTAAACGAATTATGGACGAGAAACCTGAAGTAATG
AAAAAAATTTTAGTCGTTTCGGGTGAAATTTGTGAAAAGAATTTGGGAATGAGTGATGCG
CATTTTCAGTATGTAATTGACAATACAAATATTATTTTTCATGTGGCAGCGTCTGTTCGA
TTTCAAGCACCATTAAAGTCAAATATTATGACGAATTTGGTAGCAACGAAAGAAGTGCTT
GAAATAGCAAAAACAGTGAAGAATTTGACAGTCATGGTTCATGTATCGACTGCATTTTGC
AATGTTGAATTCAGCAAAGTTAATGAAATTGTTTATGAAGCTGCAGGTGAACCATTGGAG
CTCATTAAATTAGCTAAAGAAATGGATGAAAATGCAATGGCAAATATTGAAAAAAAACTT
CTTGGATTACATCCTAATACATATACTTATACAAAACGATTGGCAGAAAATCTTGTCAGA
AATGAATTCGAAAATTCCAATTTGCCAATTTGCATTTTAAGACCGAGTATTGTCGGACCG
ACATTAAGTGAACCATTTGCTGGATGGGTTGATTCATTGAGTGCTGTCAATGGAATAAGT
TTAGCAAGCAAGAAAGGAATTTTACGCTGCATGCTTGCTGATCTTTCAGTCAATTACAAT
TTCATTCCTGTTGATCAAGCAATCAATGGCTTTATTATGGCGGCAAAAGTATTTGGAACA
ACAAAAAAAATATCATCAGAAATTCCTGTTTATAATGTGACAACTCATGAACATGCAGTT
GTTGAATATCAAAAATTCTTTGACGTCTTCAATTCACTTAAATTTCTTTATCCACTTTCT
GTTACTTTCTGGTGGCCAAATGTAACTTTTACTCAAAATAAATATTATTATTGGTTCAAT
GTCATCCTTTTTCAATGGATTCCGGCTTACTTTATTGACATGATGTTGCTGCTTTTTGGA
CGAAAGAGAATAATGGTTCGTGTACAGAAGAAAATTGCAAGTGCTTTAGATGCCATAAAA
TTCTTTGCCATGAAAAATTGGGATTTTAATACAGACAATTTTCATAATTTAACAAAAATA
CAATCAGATGAAGAATACCATATGTTCAATCTTGACACAAAAACGATAAATGCTGAAGAA
TATTTTGAAAATTCAATTGTTGGTGGAAGAATTTATCAAGATGAAGATCCTTTGACGACA
GTTCCAAAAGCAACAATTTTGATTAAATTCCTTTATGGACTTGACCTTGCTGTTAAATCA
TTCTTCTCTTACTTCATGATACGAAAACTTTTGATGATTATAGGATTATCAAGTTTTACA
TGA

>g6048.t1 Gene=g6048 Length=500
MAQRLNSVQEFYKDKTIFITGGSGFMGKVLIEKLLYSCSDLKQIIILMRVKRGKNEMARV
KEFEALPLFKRIMDEKPEVMKKILVVSGEICEKNLGMSDAHFQYVIDNTNIIFHVAASVR
FQAPLKSNIMTNLVATKEVLEIAKTVKNLTVMVHVSTAFCNVEFSKVNEIVYEAAGEPLE
LIKLAKEMDENAMANIEKKLLGLHPNTYTYTKRLAENLVRNEFENSNLPICILRPSIVGP
TLSEPFAGWVDSLSAVNGISLASKKGILRCMLADLSVNYNFIPVDQAINGFIMAAKVFGT
TKKISSEIPVYNVTTHEHAVVEYQKFFDVFNSLKFLYPLSVTFWWPNVTFTQNKYYYWFN
VILFQWIPAYFIDMMLLLFGRKRIMVRVQKKIASALDAIKFFAMKNWDFNTDNFHNLTKI
QSDEEYHMFNLDTKTINAEEYFENSIVGGRIYQDEDPLTTVPKATILIKFLYGLDLAVKS
FFSYFMIRKLLMIIGLSSFT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g6048.t1 CDD cd05236 FAR-N_SDR_e 15 317 1.02576E-107
12 g6048.t1 CDD cd09071 FAR_C 363 452 7.84083E-28
7 g6048.t1 Gene3D G3DSA:3.40.50.720 - 2 349 1.1E-61
3 g6048.t1 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 4 490 1.3E-162
4 g6048.t1 PANTHER PTHR11011:SF12 FATTY ACYL-COA REDUCTASE 4 490 1.3E-162
1 g6048.t1 Pfam PF07993 Male sterility protein 19 289 3.3E-69
2 g6048.t1 Pfam PF03015 Male sterility protein 364 452 4.5E-25
9 g6048.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 354 -
10 g6048.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 355 380 -
8 g6048.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 381 500 -
6 g6048.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 7 296 8.35E-27
5 g6048.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 358 380 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed