Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g6048 | g6048.t1 | TSS | g6048.t1 | 13857773 | 13857773 |
chr_2 | g6048 | g6048.t1 | isoform | g6048.t1 | 13857847 | 13860906 |
chr_2 | g6048 | g6048.t1 | exon | g6048.t1.exon1 | 13857847 | 13858047 |
chr_2 | g6048 | g6048.t1 | cds | g6048.t1.CDS1 | 13857847 | 13858047 |
chr_2 | g6048 | g6048.t1 | exon | g6048.t1.exon2 | 13859186 | 13860135 |
chr_2 | g6048 | g6048.t1 | cds | g6048.t1.CDS2 | 13859186 | 13860135 |
chr_2 | g6048 | g6048.t1 | exon | g6048.t1.exon3 | 13860193 | 13860324 |
chr_2 | g6048 | g6048.t1 | cds | g6048.t1.CDS3 | 13860193 | 13860324 |
chr_2 | g6048 | g6048.t1 | exon | g6048.t1.exon4 | 13860379 | 13860504 |
chr_2 | g6048 | g6048.t1 | cds | g6048.t1.CDS4 | 13860379 | 13860504 |
chr_2 | g6048 | g6048.t1 | exon | g6048.t1.exon5 | 13860813 | 13860906 |
chr_2 | g6048 | g6048.t1 | cds | g6048.t1.CDS5 | 13860813 | 13860906 |
chr_2 | g6048 | g6048.t1 | TTS | g6048.t1 | 13861822 | 13861822 |
>g6048.t1 Gene=g6048 Length=1503
ATGGCTCAACGTTTAAATTCAGTGCAAGAATTTTATAAAGACAAAACAATTTTCATCACA
GGTGGATCAGGATTTATGGGAAAAGTTCTAATTGAAAAGCTGCTTTATTCATGTTCTGAT
TTAAAGCAAATAATCATTTTGATGAGAGTTAAAAGAGGAAAGAACGAAATGGCAAGAGTT
AAAGAATTTGAAGCACTTCCTCTGTTTAAACGAATTATGGACGAGAAACCTGAAGTAATG
AAAAAAATTTTAGTCGTTTCGGGTGAAATTTGTGAAAAGAATTTGGGAATGAGTGATGCG
CATTTTCAGTATGTAATTGACAATACAAATATTATTTTTCATGTGGCAGCGTCTGTTCGA
TTTCAAGCACCATTAAAGTCAAATATTATGACGAATTTGGTAGCAACGAAAGAAGTGCTT
GAAATAGCAAAAACAGTGAAGAATTTGACAGTCATGGTTCATGTATCGACTGCATTTTGC
AATGTTGAATTCAGCAAAGTTAATGAAATTGTTTATGAAGCTGCAGGTGAACCATTGGAG
CTCATTAAATTAGCTAAAGAAATGGATGAAAATGCAATGGCAAATATTGAAAAAAAACTT
CTTGGATTACATCCTAATACATATACTTATACAAAACGATTGGCAGAAAATCTTGTCAGA
AATGAATTCGAAAATTCCAATTTGCCAATTTGCATTTTAAGACCGAGTATTGTCGGACCG
ACATTAAGTGAACCATTTGCTGGATGGGTTGATTCATTGAGTGCTGTCAATGGAATAAGT
TTAGCAAGCAAGAAAGGAATTTTACGCTGCATGCTTGCTGATCTTTCAGTCAATTACAAT
TTCATTCCTGTTGATCAAGCAATCAATGGCTTTATTATGGCGGCAAAAGTATTTGGAACA
ACAAAAAAAATATCATCAGAAATTCCTGTTTATAATGTGACAACTCATGAACATGCAGTT
GTTGAATATCAAAAATTCTTTGACGTCTTCAATTCACTTAAATTTCTTTATCCACTTTCT
GTTACTTTCTGGTGGCCAAATGTAACTTTTACTCAAAATAAATATTATTATTGGTTCAAT
GTCATCCTTTTTCAATGGATTCCGGCTTACTTTATTGACATGATGTTGCTGCTTTTTGGA
CGAAAGAGAATAATGGTTCGTGTACAGAAGAAAATTGCAAGTGCTTTAGATGCCATAAAA
TTCTTTGCCATGAAAAATTGGGATTTTAATACAGACAATTTTCATAATTTAACAAAAATA
CAATCAGATGAAGAATACCATATGTTCAATCTTGACACAAAAACGATAAATGCTGAAGAA
TATTTTGAAAATTCAATTGTTGGTGGAAGAATTTATCAAGATGAAGATCCTTTGACGACA
GTTCCAAAAGCAACAATTTTGATTAAATTCCTTTATGGACTTGACCTTGCTGTTAAATCA
TTCTTCTCTTACTTCATGATACGAAAACTTTTGATGATTATAGGATTATCAAGTTTTACA
TGA
>g6048.t1 Gene=g6048 Length=500
MAQRLNSVQEFYKDKTIFITGGSGFMGKVLIEKLLYSCSDLKQIIILMRVKRGKNEMARV
KEFEALPLFKRIMDEKPEVMKKILVVSGEICEKNLGMSDAHFQYVIDNTNIIFHVAASVR
FQAPLKSNIMTNLVATKEVLEIAKTVKNLTVMVHVSTAFCNVEFSKVNEIVYEAAGEPLE
LIKLAKEMDENAMANIEKKLLGLHPNTYTYTKRLAENLVRNEFENSNLPICILRPSIVGP
TLSEPFAGWVDSLSAVNGISLASKKGILRCMLADLSVNYNFIPVDQAINGFIMAAKVFGT
TKKISSEIPVYNVTTHEHAVVEYQKFFDVFNSLKFLYPLSVTFWWPNVTFTQNKYYYWFN
VILFQWIPAYFIDMMLLLFGRKRIMVRVQKKIASALDAIKFFAMKNWDFNTDNFHNLTKI
QSDEEYHMFNLDTKTINAEEYFENSIVGGRIYQDEDPLTTVPKATILIKFLYGLDLAVKS
FFSYFMIRKLLMIIGLSSFT
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
11 | g6048.t1 | CDD | cd05236 | FAR-N_SDR_e | 15 | 317 | 1.02576E-107 |
12 | g6048.t1 | CDD | cd09071 | FAR_C | 363 | 452 | 7.84083E-28 |
7 | g6048.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 349 | 1.1E-61 |
3 | g6048.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 4 | 490 | 1.3E-162 |
4 | g6048.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 4 | 490 | 1.3E-162 |
1 | g6048.t1 | Pfam | PF07993 | Male sterility protein | 19 | 289 | 3.3E-69 |
2 | g6048.t1 | Pfam | PF03015 | Male sterility protein | 364 | 452 | 4.5E-25 |
9 | g6048.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 354 | - |
10 | g6048.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 380 | - |
8 | g6048.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 381 | 500 | - |
6 | g6048.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 296 | 8.35E-27 |
5 | g6048.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 380 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed