General information for g607.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g607 is located on chr_3: 4491386..4493528 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g607 | g607.t3 | TTS | g607.t3 | 4490128 | 4490128 |
| chr_3 | g607 | g607.t3 | isoform | g607.t3 | 4490213 | 4491386 |
| chr_3 | g607 | g607.t3 | exon | g607.t3.exon1 | 4490213 | 4490884 |
| chr_3 | g607 | g607.t3 | cds | g607.t3.CDS1 | 4490823 | 4490884 |
| chr_3 | g607 | g607.t3 | exon | g607.t3.exon2 | 4490999 | 4491269 |
| chr_3 | g607 | g607.t3 | cds | g607.t3.CDS2 | 4490999 | 4491269 |
| chr_3 | g607 | g607.t3 | exon | g607.t3.exon3 | 4491330 | 4491386 |
| chr_3 | g607 | g607.t3 | cds | g607.t3.CDS3 | 4491330 | 4491386 |
| chr_3 | g607 | g607.t3 | TSS | g607.t3 | 4491471 | 4491471 |
Sequences
>g607.t3 Gene=g607 Length=1000
ATGGACAAATTTTCATTAATATCTGCTGGATTATTTTCAACTGCTGGCATTTGTGCTATA
ATTGCAATTTCAAGCAGTGAATGGATTGTTGAAGTTGGAAATAACTCTAAATATGGATTA
ATGTGGTCATGCTTGACATTAGTGAATAGAACCCATCAAATTTGTTACACACCTGTTCTT
TCTGTGGAATGGCTCATTACATTAATTTTAATTTTTCTCGGAATTATTTGCATTACGACA
GTTGTCATATTATTATTTGCAAGTCGATGGGACAGAAATGTGATTTTCTATGCTCGTTGG
ATTGGATTTACAGCAATGGTTGTTTTTTCACTTTGGATTACGGTCATATCAGAGCTTTTT
GCTGGAAAAATTTGTTTACCGCATTTTTAAAAAATGACAAAAATAATCTCATTAAAAATA
GAAAGACAATGAAATCAATTCAGTCTTCATGCAAGTTTAAAATGACTGTTCATGTAAAAA
AGATGTTGTATGAATCATTTTGATTTATGTCTATCTCATTTTGATACTTATTCTTATTAG
AATTCATTATTGTGTCAAGGTGAAGTGCTTAGAGTGTCATGATTCATGAATAATTTTTGC
ACGAGGAATTCATCGAGATGTTTAAATTTTTTTTCTGGAACATTTCTTTAAATTTATTAC
AACCAATACATTCACATTAAGAAAAATATTTTTAAAATTCTCATTAAAATTTTATGCAAC
AGTTGTTTGCTATTTATTTTTGTATTCAAAGTTTTAAGTTTGGGAAAAAAATCCTGATCA
ATTATTTAATATTTCAAGTTCTTTTTTTCTTCTGTCTCCAAAAATAGCTCTCCTTACAAA
GTCCATTTTTTTATTGAATCTCTCTTAAATGTCAATAATAATTTTTGCATGCAAATGATA
TTTCTCAGACATCGTTTGTGACGACGTCATAACAATTATGAAGGAATCATTTTACACTAC
TAAAATTTACTTCACCTTGTGTACAATACATACAATACCA
>g607.t3 Gene=g607 Length=129
MDKFSLISAGLFSTAGICAIIAISSSEWIVEVGNNSKYGLMWSCLTLVNRTHQICYTPVL
SVEWLITLILIFLGIICITTVVILLFASRWDRNVIFYARWIGFTAMVVFSLWITVISELF
AGKICLPHF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g607.t3 | PANTHER | PTHR31186 | MODULATOR OF SMOOTHENED PROTEIN | 1 | 111 | 2.1E-31 |
| 1 | g607.t3 | Pfam | PF18800 | Attenuator of Hedgehog | 27 | 110 | 2.5E-26 |
| 9 | g607.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 10 | g607.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 11 | g607.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 21 | - |
| 14 | g607.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 26 | - |
| 7 | g607.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 63 | - |
| 13 | g607.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 87 | - |
| 6 | g607.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 88 | 93 | - |
| 12 | g607.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 113 | - |
| 8 | g607.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 114 | 129 | - |
| 3 | g607.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 4 | g607.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 87 | - |
| 5 | g607.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 116 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
