General information for g6119.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6119 is located on chr_2: 14314812..14336406 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6119 | g6119.t1 | isoform | g6119.t1 | 14314812 | 14336406 |
| chr_2 | g6119 | g6119.t1 | exon | g6119.t1.exon1 | 14314812 | 14314927 |
| chr_2 | g6119 | g6119.t1 | cds | g6119.t1.CDS1 | 14314812 | 14314927 |
| chr_2 | g6119 | g6119.t1 | exon | g6119.t1.exon2 | 14315133 | 14315268 |
| chr_2 | g6119 | g6119.t1 | cds | g6119.t1.CDS2 | 14315133 | 14315268 |
| chr_2 | g6119 | g6119.t1 | exon | g6119.t1.exon3 | 14335970 | 14336067 |
| chr_2 | g6119 | g6119.t1 | cds | g6119.t1.CDS3 | 14335970 | 14336067 |
| chr_2 | g6119 | g6119.t1 | exon | g6119.t1.exon4 | 14336274 | 14336406 |
| chr_2 | g6119 | g6119.t1 | cds | g6119.t1.CDS4 | 14336274 | 14336406 |
| chr_2 | g6119 | g6119.t1 | TSS | g6119.t1 | NA | NA |
| chr_2 | g6119 | g6119.t1 | TTS | g6119.t1 | NA | NA |
Sequences
>g6119.t1 Gene=g6119 Length=483
ATGTTAGTGTATAAAAGTGTTCTCCTGCTCACATTTTTAGTGTTCAGAACTAGTTCCGTT
AGTGGACATAATCAGCTTCATATTGGTGGAATTTTTCCGATCGCTGGCAAAGGTGGCTGG
CAGGGCGGTCAAGCATGCATGCCAGCCGCATATTTAGCTCTAGAGGATGTTAATAAGAAA
AAAGATTTACTGCCAGATTTTCAGCTCACATTACACAACAATGATTCAGAGGCAATGTTA
GTGTATAAAAGTGTTCTCCTGCTCACATTTTTAGTGTTCAGAACTAGTTCCGTTAGTGGA
CATAATCAGCTTCATATTGGTGGAATTTTTCCGATCGCTGGCAAAGGTGGCTGGCAGGGC
GGTCAAGCATGCATGCCAGCCGCATATTTAGCTCTAGAGGATGTTAATAAGAAAAAAGAT
TTACTGCCAGATTTTCAGCTCACATTACACAACAATGATTCAGAGGTGAGTCACATTAAA
TAA
>g6119.t1 Gene=g6119 Length=160
MLVYKSVLLLTFLVFRTSSVSGHNQLHIGGIFPIAGKGGWQGGQACMPAAYLALEDVNKK
KDLLPDFQLTLHNNDSEAMLVYKSVLLLTFLVFRTSSVSGHNQLHIGGIFPIAGKGGWQG
GQACMPAAYLALEDVNKKKDLLPDFQLTLHNNDSEVSHIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6119.t1 | Gene3D | G3DSA:3.40.50.2300 | - | 22 | 88 | 2.9E-10 |
| 9 | g6119.t1 | Gene3D | G3DSA:3.40.50.2300 | - | 100 | 160 | 2.5E-10 |
| 2 | g6119.t1 | PANTHER | PTHR10519:SF42 | GAMMA-AMINOBUTYRIC ACID TYPE B RECEPTOR SUBUNIT 1 | 15 | 78 | 3.3E-30 |
| 4 | g6119.t1 | PANTHER | PTHR10519 | GABA-B RECEPTOR | 15 | 78 | 3.3E-30 |
| 1 | g6119.t1 | PANTHER | PTHR10519:SF42 | GAMMA-AMINOBUTYRIC ACID TYPE B RECEPTOR SUBUNIT 1 | 93 | 157 | 3.3E-30 |
| 3 | g6119.t1 | PANTHER | PTHR10519 | GABA-B RECEPTOR | 93 | 157 | 3.3E-30 |
| 11 | g6119.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 12 | g6119.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 13 | g6119.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 15 | - |
| 14 | g6119.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 22 | - |
| 10 | g6119.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 160 | - |
| 6 | g6119.t1 | SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | 25 | 77 | 7.46E-10 |
| 5 | g6119.t1 | SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | 103 | 155 | 8.24E-10 |
| 7 | g6119.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0004965 | G protein-coupled GABA receptor activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed