General information for g6165.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6165 is located on chr_2: 14686709..14707284 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6165 | g6165.t4 | isoform | g6165.t4 | 14686709 | 14689895 |
| chr_2 | g6165 | g6165.t4 | exon | g6165.t4.exon1 | 14686709 | 14687064 |
| chr_2 | g6165 | g6165.t4 | cds | g6165.t4.CDS1 | 14687032 | 14687064 |
| chr_2 | g6165 | g6165.t4 | exon | g6165.t4.exon2 | 14687416 | 14687763 |
| chr_2 | g6165 | g6165.t4 | cds | g6165.t4.CDS2 | 14687416 | 14687763 |
| chr_2 | g6165 | g6165.t4 | exon | g6165.t4.exon3 | 14689633 | 14689895 |
| chr_2 | g6165 | g6165.t4 | cds | g6165.t4.CDS3 | 14689633 | 14689653 |
| chr_2 | g6165 | g6165.t4 | TSS | g6165.t4 | 14689899 | 14689899 |
| chr_2 | g6165 | g6165.t4 | TTS | g6165.t4 | NA | NA |
Sequences
>g6165.t4 Gene=g6165 Length=967
AGATAGATGGACGCATCATGTTCAGAGCAATATCGGCGAGTGCTGTTTATAAAAATAAAA
ATATTTTAAAATCGTTGACCTTTTTAAGTCAAAGAAATAAAATTTATGAAAATTCTGAAA
CAAAAAAAATTTGGAATTGAGAATTTTTAATTAAGTGAGAAAAAATTTAAAAAGCAATTA
TAAATAATTAAGCAAGTCAAAATCAATTTGTTATCACGCTAATAAATTTCACTTGAGCTA
TAATGGAAGTGCCTCAAATACATATTGAACGATTGGAGGATGGACTTAATGTGCTTCATG
TGCTAAGTGTCGATCATAATATAAGTGGTGAAGTAAAGTGCCGCGTCATTAGTCATAATA
ATCCGCAAATTTTTAACGTCTATCATACAAATTTGACTGTTTTACCTGTACCAATTAATG
AACGATACGAACCGATTGAAACAGTTTTAGAAAATAATAGCAATAATAAGAGTAGTTTAG
TGCACGACTTAGATCTAACATGCTTCATTACAAAACGACCAGAGGATCGAACGGTGCTTG
TTGGTGATTCGATTGAACTTAACGTGTCGTATATTGGGTATCCAGAACCAACAGTACGCT
GGATGCGAGCTTTTGATAACAAGAAAATAATGAACAAGTGCTAGAATACAATTTTAAAAG
AAATAATAGATTATTATTTTCATTCAATTATTATAGTTTATTTTAAAACAAACTTCTATT
TATTTTCAGTCTATTATGTTATCTTAGTATGTGTTAGCTTAATATACTTTAACTCAAATT
CAGCGATTTCTTAAAATTAAATTTAAAAAAAAACGTTGAAAAACCCAAAAACTTCTATTC
TGTTGTAAAATTTCTACAATTTTATATTTCTATTTGTATAATTGTAAAAATTTTACAACA
TTGTAAAATTGTTTTTTTTTACAATTTTACATGATAATGTTAAATAAAAGTTTCTACAAC
TTCTTAA
>g6165.t4 Gene=g6165 Length=133
MEVPQIHIERLEDGLNVLHVLSVDHNISGEVKCRVISHNNPQIFNVYHTNLTVLPVPINE
RYEPIETVLENNSNNKSSLVHDLDLTCFITKRPEDRTVLVGDSIELNVSYIGYPEPTVRW
MRAFDNKKIMNKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6165.t4 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 80 | 132 | 4.4e-06 |
| 1 | g6165.t4 | Pfam | PF07679 | Immunoglobulin I-set domain | 89 | 127 | 2.2e-05 |
| 2 | g6165.t4 | SUPERFAMILY | SSF48726 | Immunoglobulin | 89 | 131 | 4.0e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed