General information for g6182.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein enabled.
Parent gene
- The parent gene g6182 is located on chr_2: 15025391..15032954 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6182 | g6182.t2 | TSS | g6182.t2 | 15023101 | 15023101 |
| chr_2 | g6182 | g6182.t2 | isoform | g6182.t2 | 15023972 | 15032954 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon1 | 15023972 | 15023979 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS1 | 15023972 | 15023979 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon2 | 15024106 | 15024669 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS2 | 15024106 | 15024669 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon3 | 15025391 | 15026177 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS3 | 15025391 | 15026177 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon4 | 15026236 | 15026412 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS4 | 15026236 | 15026412 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon5 | 15026479 | 15026599 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS5 | 15026479 | 15026599 |
| chr_2 | g6182 | g6182.t2 | exon | g6182.t2.exon6 | 15032923 | 15032954 |
| chr_2 | g6182 | g6182.t2 | cds | g6182.t2.CDS6 | 15032923 | 15032954 |
| chr_2 | g6182 | g6182.t2 | TTS | g6182.t2 | NA | NA |
Sequences
>g6182.t2 Gene=g6182 Length=1689
ATGTTTCCTGAACAAAGTATCATAGGCGCACGAGCCTCTGTAATGATTTACGATGAAAAT
TTAAAGAAATGGATTCCATCAGGCAATTCAAGCGGTCTTAGTAAAGTCCAAATATTTCAT
CATATACAAAACAACACATTTCGTGTTGTTGGCAGAAAACTTCAGGATCACGAAGTTGTC
ATAAATTGTTCGATAGTCAAAGGCCTCAAATATAATCAGGCAACTGCCACATTTCATCAA
TGGCGCGACTCAAAATATGTATATGGATTAAATTTTTCTAGTCAACAAGATGCTGAAAGT
TTTGCACGTGCGATGATGCACACATTGGAAGTATTGAGTGGTCGTGCTGTTGCAGTGCCA
GTCAATAATAATCAACAGACTCAACAACAGCCACCACAACAACAACAACAGCAACAGCCT
TCATATGAAGAAGATATGGGATATCGTACAATGACACGTGAGGATGCCGATATCGTCCTT
AACAATCAACAGCCACAGCAAATTTTGTCACCTCAAACGCCTACTTCACAAACTATGAGT
AGCGTTCAACAAGGACATCATCGTGCGAGCAGCGCTCCACAAGCACCACAAATGCCAACA
ATGTCGGTTATGCCACAACAGCAAATGCAAAATTATTCTCAACAGCCACAATATCCGATT
TATGCATCTGGTCAACAACAGCAGCAACAAATGAATCATCAACAGAATGGTGGCGGTCCT
ATTTATGTTCCATCATCCATATCAGTACAGAATCAACTTAATAATGTCGCGACAGTTTCA
AAATCTGGTCCACAACCGTCAATGCAAATGCCGAATAATAACAATCAATATGGTCATGGA
CAAATGATGCAGCAGCAACAACAGCAAATTCCACAGCCGCCTCAACAAATTCCACAAGCA
CCACAATATATGCCAACATTACAACAACAAATGAGCAATCCAGGTGCTCCAATTCCGCCG
CCACCACCAGCAGGTTTTGGGAATGCAATTTCGGCACCAGTACCACCACCAGCACCTCAA
ATGCCGCCATTAAATGTAGCACACGTTGCACCAAATAATTCAGCACCATCAGCAGGTGCA
CCACCACCTCCACCACCGCCACCAAATAATGCAAAATCAGGCGGCATGGATATGAGTTCA
TTGGCAGCTCAATTACAACAAGCAAAATTAAAACGCACTCAAGGACCATCACAGCAACAG
CCAGCAAATGAAAATAGTGGAAATAGTACATCAAGTAGTGGCAGTGGCGGTGCTGGAAAT
TATGGAACAATTGGAAGAACAACAGGCGGTGAAATGGCATCAATGATGGATGAAATGGCT
AAAACATTAGCTAGACGTCGTGAACGTCAAAAAGATACTAGCCAAGATGGTGATAATGAC
AAATGGGAAAAATCAAATACATTACCACATAAGTTGAGTAATAGTAATTCTCAAACACTT
CCATCATCATCATCATCAAATGCAGCATCATCATTGGCCGATTCACCACAATCACGTAAA
CGTTTCGGCAGTGCCTCAGAAGAGACTATTTTGAAGCAAGTGAATGGCGGCGAGAATTTT
TCATTACCACCGGCATTTGACATGAAAGCATTTAAAGCTGAAATTTTAAAAGAAATGCGA
AGCGAAATAACCAAAGCAAAGAATGAAATCATTGACGCTATCAAAGTAGAACTTAATCGA
CGCCGATAA
>g6182.t2 Gene=g6182 Length=562
MFPEQSIIGARASVMIYDENLKKWIPSGNSSGLSKVQIFHHIQNNTFRVVGRKLQDHEVV
INCSIVKGLKYNQATATFHQWRDSKYVYGLNFSSQQDAESFARAMMHTLEVLSGRAVAVP
VNNNQQTQQQPPQQQQQQQPSYEEDMGYRTMTREDADIVLNNQQPQQILSPQTPTSQTMS
SVQQGHHRASSAPQAPQMPTMSVMPQQQMQNYSQQPQYPIYASGQQQQQQMNHQQNGGGP
IYVPSSISVQNQLNNVATVSKSGPQPSMQMPNNNNQYGHGQMMQQQQQQIPQPPQQIPQA
PQYMPTLQQQMSNPGAPIPPPPPAGFGNAISAPVPPPAPQMPPLNVAHVAPNNSAPSAGA
PPPPPPPPNNAKSGGMDMSSLAAQLQQAKLKRTQGPSQQQPANENSGNSTSSSGSGGAGN
YGTIGRTTGGEMASMMDEMAKTLARRRERQKDTSQDGDNDKWEKSNTLPHKLSNSNSQTL
PSSSSSNAASSLADSPQSRKRFGSASEETILKQVNGGENFSLPPAFDMKAFKAEILKEMR
SEITKAKNEIIDAIKVELNRRR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g6182.t2 | CDD | cd01207 | EVH1_Ena_VASP-like | 6 | 113 | 4.59654E-64 |
| 9 | g6182.t2 | Coils | Coil | Coil | 536 | 556 | - |
| 8 | g6182.t2 | Gene3D | G3DSA:2.30.29.30 | - | 2 | 117 | 2.2E-41 |
| 7 | g6182.t2 | Gene3D | G3DSA:1.20.5.1160 | - | 524 | 562 | 6.0E-8 |
| 18 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 144 | - |
| 12 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 208 | - |
| 17 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 507 | - |
| 16 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 371 | - |
| 13 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 422 | - |
| 15 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 467 | - |
| 14 | g6182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 507 | - |
| 3 | g6182.t2 | PANTHER | PTHR11202 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 2 | 560 | 2.2E-94 |
| 4 | g6182.t2 | PANTHER | PTHR11202:SF22 | PROTEIN ENABLED | 2 | 560 | 2.2E-94 |
| 2 | g6182.t2 | Pfam | PF00568 | WH1 domain | 5 | 108 | 5.8E-32 |
| 1 | g6182.t2 | Pfam | PF08776 | VASP tetramerisation domain | 526 | 561 | 1.0E-14 |
| 19 | g6182.t2 | ProSiteProfiles | PS50229 | WH1 domain profile. | 1 | 112 | 18.418 |
| 11 | g6182.t2 | SMART | SM00461 | WH1_2 | 2 | 109 | 3.1E-41 |
| 5 | g6182.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 3 | 139 | 4.03E-38 |
| 6 | g6182.t2 | SUPERFAMILY | SSF118370 | Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain | 525 | 561 | 7.06E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05746 (enabled)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
