General information for g6182.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein enabled.
Parent gene
- The parent gene g6182 is located on chr_2: 15025391..15032954 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6182 | g6182.t4 | isoform | g6182.t4 | 15022825 | 15024669 |
| chr_2 | g6182 | g6182.t4 | exon | g6182.t4.exon1 | 15022825 | 15023979 |
| chr_2 | g6182 | g6182.t4 | TSS | g6182.t4 | 15023101 | 15023101 |
| chr_2 | g6182 | g6182.t4 | TTS | g6182.t4 | 15023839 | 15023839 |
| chr_2 | g6182 | g6182.t4 | exon | g6182.t4.exon2 | 15024123 | 15024669 |
| chr_2 | g6182 | g6182.t4 | cds | g6182.t4.CDS1 | 15024140 | 15024667 |
Sequences
>g6182.t4 Gene=g6182 Length=1702
TGCCAAGATGACTTTTTTCAAAACAAAAAACCGAGAAGACAGCATTGAACAGTTTTGCTA
AAAAATAACATTTTGTCAAGAAATTCAAGAAATTTTAATGAAATGTTTAGAAAATATTAA
AAATTAAAATAAATTTTGAAAGGTTGTAAAATTAAAATTAAAATTGTTTTATTAAAAATA
TTTTATAATAAATTAAAGAACTTTAAATGCGCTTTAAATAAACCATTGTTCTAAGTGTTG
TTTGACTAACATTTTTCAAAGGAAATTATGAGCATCGCGGTGGTAAAGGAAAAAGTATTG
TATAGAAAACTTTAGCTCGTGAAAAATTAAATAAAAATCGGCAAAATAATTGCATAAATG
TAAAAAATTAGAGGCAAAAGTGATGCTAAATGCAAAGTGATATGAAAAATAGTTCAAGTT
CAAGCAAACCATAACCGGGAGCAAAAGAAATTTTTTAATTTTATGTTTCTCTTTTTTTTT
GTTGCTGAAATAAAAATTTCGCATTTATCATCAAATGGAAGTTGTAAAATAAGATTAATG
TTATTTATGACTGATTAGATAAATAATAAATTAATTCCATATTGTGCAAAGGTGCAATAA
ATTGATAAGTAAAATAAATAGTGTGTGAAAGAAAGTTATATATATAAAAAAAATGCAAAA
AGGATTTGATGAAGAAATAAGGGAGGAGTGTGTATAATATGAAACAGAAAAGTGAGAAGA
GAGAAAAAAATTTGTAAAGTCGGAAACCTGAGAACATTTTGTTGTTTTATGGATGCCGAA
TCAATTTTATTGTCATTTATATGAATAAAAATTGAGCTCAAATGAGCACAAAATAAAATT
TTTCATAATTTTAATCAAAATGCACTTGAGTGTAAATGCATCAGTGAATGAGTGAAAATA
GTAATAAAAAATCTTCTAAAATACGGAAGTTGAATTCAAGAATACGATTTAATAATAAAA
AATTGAATGATAAGCGTTCAATGAACTGAGTAAAAAAGAAAAAGAAAAAATTATCCAAAA
ATATAAAAAAATCATAAAAAATAGTTTTTCTTCCTCTTCTTTCACATACAATTGAAAGTG
AGAGAGAGAGACGACAAGATATAAGACATTTCGACATATATTTACTCCCCCATAGAATAT
TCACATCATGTTTCCGCGCACGAGCCTCTGTAATGATTTACGATGAAAATTTAAAGAAAT
GGATTCCATCAGGCAATTCAAGCGGTCTTAGTAAAGTCCAAATATTTCATCATATACAAA
ACAACACATTTCGTGTTGTTGGCAGAAAACTTCAGGATCACGAAGTTGTCATAAATTGTT
CGATAGTCAAAGGCCTCAAATATAATCAGGCAACTGCCACATTTCATCAATGGCGCGACT
CAAAATATGTATATGGATTAAATTTTTCTAGTCAACAAGATGCTGAAAGTTTTGCACGTG
CGATGATGCACACATTGGAAGTATTGAGTGGTCGTGCTGTTGCAGTGCCAGTCAATAATA
ATCAACAGACTCAACAACAGCCACCACAACAACAACAACAGCAACAGCCTTCATATGAAG
AAGATATGGGATATCGTACAATGACACGTGAGGATGCCGATATCGTCCTTAACAATCAAC
AGCCACAGCAAATTTTGTCACCTCAAACGCCTACTTCACAAACTATGAGTAGCGTTCAAC
AAGGACATCATCGTGCGAGCAG
>g6182.t4 Gene=g6182 Length=176
MIYDENLKKWIPSGNSSGLSKVQIFHHIQNNTFRVVGRKLQDHEVVINCSIVKGLKYNQA
TATFHQWRDSKYVYGLNFSSQQDAESFARAMMHTLEVLSGRAVAVPVNNNQQTQQQPPQQ
QQQQQPSYEEDMGYRTMTREDADIVLNNQQPQQILSPQTPTSQTMSSVQQGHHRAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6182.t4 | CDD | cd01207 | EVH1_Ena_VASP-like | 1 | 99 | 2.54088E-61 |
| 5 | g6182.t4 | Gene3D | G3DSA:2.30.29.30 | - | 1 | 103 | 1.1E-37 |
| 9 | g6182.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 131 | - |
| 10 | g6182.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 176 | - |
| 8 | g6182.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 176 | - |
| 2 | g6182.t4 | PANTHER | PTHR11202 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 1 | 167 | 7.0E-55 |
| 3 | g6182.t4 | PANTHER | PTHR11202:SF22 | PROTEIN ENABLED | 1 | 167 | 7.0E-55 |
| 1 | g6182.t4 | Pfam | PF00568 | WH1 domain | 2 | 94 | 1.2E-29 |
| 11 | g6182.t4 | ProSiteProfiles | PS50229 | WH1 domain profile. | 1 | 98 | 18.314 |
| 7 | g6182.t4 | SMART | SM00461 | WH1_2 | 1 | 95 | 3.0E-30 |
| 4 | g6182.t4 | SUPERFAMILY | SSF50729 | PH domain-like | 1 | 125 | 7.16E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
