General information for g6182.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6182 is located on chr_2: 15025391..15032954 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6182 | g6182.t5 | isoform | g6182.t5 | 15025391 | 15026412 |
| chr_2 | g6182 | g6182.t5 | exon | g6182.t5.exon1 | 15025391 | 15026177 |
| chr_2 | g6182 | g6182.t5 | cds | g6182.t5.CDS1 | 15025410 | 15026177 |
| chr_2 | g6182 | g6182.t5 | exon | g6182.t5.exon2 | 15026283 | 15026412 |
| chr_2 | g6182 | g6182.t5 | cds | g6182.t5.CDS2 | 15026283 | 15026288 |
| chr_2 | g6182 | g6182.t5 | TSS | g6182.t5 | NA | NA |
| chr_2 | g6182 | g6182.t5 | TTS | g6182.t5 | NA | NA |
Sequences
>g6182.t5 Gene=g6182 Length=917
CGCTCCACAAGCACCACAAATGCCAACAATGTCGGTTATGCCACAACAGCAAATGCAAAA
TTATTCTCAACAGCCACAATATCCGATTTATGCATCTGGTCAACAACAGCAGCAACAAAT
GAATCATCAACAGAATGGTGGCGGTCCTATTTATGTTCCATCATCCATATCAGTACAGAA
TCAACTTAATAATGTCGCGACAGTTTCAAAATCTGGTCCACAACCGTCAATGCAAATGCC
GAATAATAACAATCAATATGGTCATGGACAAATGATGCAGCAGCAACAACAGCAAATTCC
ACAGCCGCCTCAACAAATTCCACAAGCACCACAATATATGCCAACATTACAACAACAAAT
GAGCAATCCAGGTGCTCCAATTCCGCCGCCACCACCAGCAGGTTTTGGGAATGCAATTTC
GGCACCAGTACCACCACCAGCACCTCAAATGCCGCCATTAAATGTAGCACACGTTGCACC
AAATAATTCAGCACCATCAGCAGGTGCACCACCACCTCCACCACCGCCACCAAATAATGC
AAAATCAGGCGGCATGGATATGAGTTCATTGGCAGCTCAATTACAACAAGCAAAATTAAA
ACGCACTCAAGGACCATCACAGCAACAGCCAGCAAATGAAAATAGTGGAAATAGTACATC
AAGTAGTGGCAGTGGCGGTGCTGGAAATTATGGAACAATTGGAAGAACAACAGGCGGTGA
AATGGCATCAATGATGGATGAAATGGCTAAAACATTAGCTAGACGTCGTGAACGTCAAAA
AGATACTACATAAGTTGAGTAATAGTAATTCTCAAACACTTCCATCATCATCATCATCAA
ATGCAGCATCATCATTGGCCGATTCACCACAATCACGTAAACGTTTCGGCAGTGCCTCAG
AAGAGACTATTTTGAAG
>g6182.t5 Gene=g6182 Length=257
MPTMSVMPQQQMQNYSQQPQYPIYASGQQQQQQMNHQQNGGGPIYVPSSISVQNQLNNVA
TVSKSGPQPSMQMPNNNNQYGHGQMMQQQQQQIPQPPQQIPQAPQYMPTLQQQMSNPGAP
IPPPPPAGFGNAISAPVPPPAPQMPPLNVAHVAPNNSAPSAGAPPPPPPPPNNAKSGGMD
MSSLAAQLQQAKLKRTQGPSQQQPANENSGNSTSSSGSGGAGNYGTIGRTTGGEMASMMD
EMAKTLARRRERQKDTT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6182.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - |
| 4 | g6182.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 257 | - |
| 2 | g6182.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 174 | - |
| 1 | g6182.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 225 | - |
| 5 | g6182.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
