General information for g6204.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mpv17-like protein.
Parent gene
- The parent gene g6204 is located on chr_2: 15252527..15254636 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6204 | g6204.t4 | isoform | g6204.t4 | 15252084 | 15254062 |
| chr_2 | g6204 | g6204.t4 | exon | g6204.t4.exon1 | 15252084 | 15252961 |
| chr_2 | g6204 | g6204.t4 | TTS | g6204.t4 | 15252090 | 15252090 |
| chr_2 | g6204 | g6204.t4 | cds | g6204.t4.CDS1 | 15252527 | 15252910 |
| chr_2 | g6204 | g6204.t4 | exon | g6204.t4.exon2 | 15253594 | 15253851 |
| chr_2 | g6204 | g6204.t4 | exon | g6204.t4.exon3 | 15253923 | 15254062 |
| chr_2 | g6204 | g6204.t4 | TSS | g6204.t4 | 15254068 | 15254068 |
Sequences
>g6204.t4 Gene=g6204 Length=1276
GATTAGATGGTTCTAACGACCAGTCGTGTGTAGTTTTGTTATTTTTTTCTAAAATTATTT
ACATTCAAGCGTTAGTTGTGTGGTGTGCCTTTTTTCCCAATAATAATTCACCTCTGAACT
AAGCAGCAAAAAATTTCTGCGCAGAACAATCTCATCGCTTTAATTCATTTATTTTGCTTT
TTTGTGGAATCATGTTCATTTAGTTTACATTTATGATTAATCTATGGAATTTTGTTCAAT
TAGTTTTATTAAAGAAACTTCGACGACTTCTAAAGAAACTCAAGCATGGCGCTATTCGCT
GCTGCAAGATCATTTTTTCGGAAGCACCCGCTAATAGCCAACTGCAGTACGTATGGTCTT
CTTTATGTGGTGAGTATTGACTAAAGAAGAATATCCTTACTTCACCTTCACAAGATATTG
ATAAACCAACACTAGTACGATATGCAGTAATGGGAACATTTATTTACTCACCAATTCTAT
ACAATTGGTACAAATGGCTTGATGGTCGATTTCCCGGTATAGCACGCAAGACAATTCTAA
AAAAGCTAGTTCTTGATCAATTTCTTCTAACGCCTCCACTTCTCGTAATTTTCTATACTG
GAATGTCATTGATGGAATTAAAATTTGATGATCCATTTGAAGAATGTAGAAAAAAATTTG
TAACAACTTTCCAACGCTCATGCATGTTCTGGTTGCCTGCTCAAACTGTGAATTTCATTT
TAATTCCGCCAGCATTTCGAGTTATTTACATGGGTTTTGCTAGCTTCTGTTGGGTCAATA
TATTGTGCTTCCTTAAGAGACAAAAGTTGGAAGAATTTGAAGTTGCGAACTAAATAAGAA
AGCAATTTAATTTAGAATTCGCTATACAAAATTGCATAATATTTTCAGCCATGATATTAT
GCTACACTTACTAATAATGCCACATGCCAAATAATAATATAAATTAGATACAAAATTATG
AAATATTTACAAACTAACTAATTGTTGACAAATGTTAGATTTCATAAGCGAGAAAATTGT
TAAAAGTGCACTTTCAAATATTTACACACTAAAATAAATTTTATACACTTTTTTTATTGT
TGATGCACTAGAAAAACTTTTGCTTAAAATTGCAACAAATGCACAAAAATGCCTTTACTT
TTACTCTATATAGATTCTGATTTTTATAAATCTCAATTCATTCCTTATGAAAAATTCTTT
TTAAGTCAAAAAAGTCTATTTTTTGTAACTTTTAAAAGACATTTTGCGAAATAAATTTTA
GAATCATTTGAAATTT
>g6204.t4 Gene=g6204 Length=127
MGTFIYSPILYNWYKWLDGRFPGIARKTILKKLVLDQFLLTPPLLVIFYTGMSLMELKFD
DPFEECRKKFVTTFQRSCMFWLPAQTVNFILIPPAFRVIYMGFASFCWVNILCFLKRQKL
EEFEVAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6204.t4 | PANTHER | PTHR11266:SF85 | MPV17-LIKE PROTEIN | 1 | 119 | 7.8E-53 |
| 3 | g6204.t4 | PANTHER | PTHR11266 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 | 1 | 119 | 7.8E-53 |
| 1 | g6204.t4 | Pfam | PF04117 | Mpv17 / PMP22 family | 56 | 113 | 3.1E-17 |
| 7 | g6204.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 32 | - |
| 9 | g6204.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 52 | - |
| 8 | g6204.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 53 | 97 | - |
| 10 | g6204.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 115 | - |
| 6 | g6204.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 116 | 127 | - |
| 5 | g6204.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 55 | - |
| 4 | g6204.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 112 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed