General information for g6212.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative IST1-like protein.
Parent gene
- The parent gene g6212 is located on chr_2: 15279886..15281284 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6212 | g6212.t9 | TTS | g6212.t9 | 15278845 | 15278845 |
| chr_2 | g6212 | g6212.t9 | isoform | g6212.t9 | 15279128 | 15281284 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon1 | 15279128 | 15279259 |
| chr_2 | g6212 | g6212.t9 | cds | g6212.t9.CDS1 | 15279128 | 15279259 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon2 | 15279324 | 15279368 |
| chr_2 | g6212 | g6212.t9 | cds | g6212.t9.CDS2 | 15279324 | 15279368 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon3 | 15279734 | 15279817 |
| chr_2 | g6212 | g6212.t9 | cds | g6212.t9.CDS3 | 15279734 | 15279817 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon4 | 15279887 | 15280567 |
| chr_2 | g6212 | g6212.t9 | cds | g6212.t9.CDS4 | 15279887 | 15280552 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon5 | 15280634 | 15280698 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon6 | 15280755 | 15280831 |
| chr_2 | g6212 | g6212.t9 | exon | g6212.t9.exon7 | 15280897 | 15281284 |
| chr_2 | g6212 | g6212.t9 | TSS | g6212.t9 | NA | NA |
Sequences
>g6212.t9 Gene=g6212 Length=1472
TTTTATATTTAAACTGAAACTCATTTAACAATATATCATTAACTGAGAACATTATTAGTA
ACTATCAATTTTAATATCTATTAACAGTAACTGTAACTAATTTTTATTTAATAATAAAAT
AATTCCTTCAATCTTTAAAATCACTCATTTTTACCACATTTTTAGCTATAAATCTTTTGC
GTAACAACATGTCCACTTAGTTTTCAACATATACTGTGCAATGCGTTTTAATATACCTTA
TAAATATCGTTTTTAAACTTGTTTTTTGTGGTGAATTTTAGTTAGGGGGAAAAAATTAAA
TTGAAAAAAACTTGTTTATTTGTGCACAAAAACAAAATAAAGAAAGTGACTCATATTTTG
AAAATCGGAAGATTAAATTAGAATAAAAGTTGGCAGTGAATCGATTAAAGTTACTTGAGA
AAAAGAAAACAGAAACAAATCAAAAAGCAAGAAAGGAAATTGCTGATTTTATTGAGATAA
ACAAACCAGATAGAGCAAGGATTCGAGTTGAAAGTATAATAAGGGAAGACTACCTTGTAG
AAGCAATGGAGATTTTAGAAATGTTTTGCGATTTAATTCTTGCAAGATTTGGATTGATAA
CGCAGTTAAAAGAACTTGATGAGGGAATTTCGGAAGCAGTTGCAAGCATAATTTGGGTTG
CACCTCGACTCATTTCTGATGTTCCTGAACTTAAAATCATTTCTGATCAGTTAACTTTGA
AGTATGGCAAGGCTTATGCAGATGCATGTAGAGCTGCAGTTCCACCATCAAATGTTTCAG
AGAAATTGCAGCATAAAATGTCGATTCAGGCTCCACCAAAATTATTGGTTGAAAAGTATC
TAATTGAGATTGCAAAAATCTTCAATATCGATTATGAGCCTGATCAGAGTATAATGAAAG
AAGATACAAGACCAGAAGGCTTTTTGATTGATTTTGGAAACAGTAACAATTTGGATGGCA
ACAATCCAGGAAATTTCCCACCGCAACCAGGTTTTTCGGGATATCCTTTGCCTCCACAAC
TTCCAATTTTGCCCGGTCCTCCACCATTTAATTATCCAGCTCCATCAAACTCATTCACAG
GACCAAGTGCTCCTTTTAACTATAATATACCACCTATGCCTCAATCGCAAATGCCACCAC
AATTACCACAACAACCAAATGCATCACATGGACAATCTGAAAAGAAAGATTTGAATGTCA
ACTTTTTGAATGATCAAAAAAGGCATGAATCTATGCCGCCACCATATTCGGAAATTAACT
CATCAACAACAATAAGTCCGGAAGATAATGCACAGTTTACTCCAAACATGGCGATGCCAA
AACCTGCTCCACGTTCAAAGGTTTTGCCTGATGTACCAACAAATTTGCCGGATGTTCCAG
CTGATGACGATAACAATGCTAATGTAGACGATTCTGAAATTGATTTTGATGATTTGTCAA
GAAGATTCGAAGAATTAAAGAAACGACATTAA
>g6212.t9 Gene=g6212 Length=308
MEILEMFCDLILARFGLITQLKELDEGISEAVASIIWVAPRLISDVPELKIISDQLTLKY
GKAYADACRAAVPPSNVSEKLQHKMSIQAPPKLLVEKYLIEIAKIFNIDYEPDQSIMKED
TRPEGFLIDFGNSNNLDGNNPGNFPPQPGFSGYPLPPQLPILPGPPPFNYPAPSNSFTGP
SAPFNYNIPPMPQSQMPPQLPQQPNASHGQSEKKDLNVNFLNDQKRHESMPPPYSEINSS
TTISPEDNAQFTPNMAMPKPAPRSKVLPDVPTNLPDVPADDDNNANVDDSEIDFDDLSRR
FEELKKRH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6212.t9 | Coils | Coil | Coil | 287 | 307 | - |
| 6 | g6212.t9 | Gene3D | G3DSA:1.20.1260.60 | - | 1 | 122 | 6.9E-38 |
| 5 | g6212.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 294 | - |
| 4 | g6212.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 251 | - |
| 2 | g6212.t9 | PANTHER | PTHR12161:SF56 | IST1 HOMOLOG | 1 | 307 | 6.9E-54 |
| 3 | g6212.t9 | PANTHER | PTHR12161 | IST1 FAMILY MEMBER | 1 | 307 | 6.9E-54 |
| 1 | g6212.t9 | Pfam | PF03398 | Regulator of Vps4 activity in the MVB pathway | 1 | 109 | 8.2E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0015031 | protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
