General information for g6257.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6257 is located on chr_2: 15637351..15638792 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6257 | g6257.t4 | TTS | g6257.t4 | 15636596 | 15636596 |
| chr_2 | g6257 | g6257.t4 | isoform | g6257.t4 | 15636759 | 15638316 |
| chr_2 | g6257 | g6257.t4 | exon | g6257.t4.exon1 | 15636759 | 15637548 |
| chr_2 | g6257 | g6257.t4 | cds | g6257.t4.CDS1 | 15637247 | 15637548 |
| chr_2 | g6257 | g6257.t4 | exon | g6257.t4.exon2 | 15638165 | 15638316 |
| chr_2 | g6257 | g6257.t4 | cds | g6257.t4.CDS2 | 15638165 | 15638198 |
| chr_2 | g6257 | g6257.t4 | TSS | g6257.t4 | 15638792 | 15638792 |
Sequences
>g6257.t4 Gene=g6257 Length=942
ATGTCTGCTTCACCTATTGCAAGACAAGCACATTCGCATGCTCAATTGATTCCTGCCATG
AGGAAAGTTTTAATTAACGATGCATCTCAAATGCCTGATGTATACTCTTCTACACCTAAT
GGAACAATTTACTCCACAACACCGAATGGTAAGTACTAAAATTGTCTATGAACGAACCTT
CCTTTTAAACTTGAGAAACTCGCCATTGAGTCATACACCGCCCAAAAATGTTCCTTGCCA
TTTAATGAAAGACGATAATAGTCCTTTTCATAATCATAATCATCAAAATCAAATGAATGG
AACTTATCATCCACCAAAAAATAATCATCACAATAATCATCATCAAAAAGCTAGTAATAA
CAACAAAAATGCCAATAATTCAAGCAATGAGTGGCGACGACCATCAGCAGCATCAGCCGC
ATCTGATGACCATCAATTCGATATGGACATGTAATGTGTGCTGTTGCTACATAAAACACA
CTTTAGTATCTTATTGAATAATAATATTATAGTAATGTAAGCAAAAATTTGATGATTTTT
AAGGAATTTTAATGTTTTTTTTCTTCGAAAACTTTTTTGTACGATTTCAACAATATATCC
TATGCAAATTTACTGATATTCTAAATTAGAATATTTTAATTTAAAAAAAAACAACAAAAA
ATGAATCATTAATATTTGCCTTAATGTATTCGTTCACAAATTTAAATAAGTAAAAAATGC
GTGAGTAAGACAATTTATTTACCCACCAAAAAATGGATTTAATTTGTTATCTCACGTTCG
AGAATCATGATTAGGAATCACGCTTTTTAAAATTTAAATGTCTCTTGTGATAAAAAAAAT
TTTCTTTCTCATATGAACCTGGTTGAGGAAAAATGAGCTTTTCTTCATATATGTTCATTA
CGCAGAATGAAAATCAATTTCAATCTTCAGTTTTAAATAAAT
>g6257.t4 Gene=g6257 Length=111
MEQFTPQHRMVSTKIVYERTFLLNLRNSPLSHTPPKNVPCHLMKDDNSPFHNHNHQNQMN
GTYHPPKNNHHNNHHQKASNNNKNANNSSNEWRRPSAASAASDDHQFDMDM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6257.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 111 | - |
| 2 | g6257.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 67 | - |
| 3 | g6257.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 96 | - |
| 1 | g6257.t4 | Pfam | PF05456 | Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) | 12 | 111 | 1.9E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008190 | eukaryotic initiation factor 4E binding | MF |
| GO:0045947 | negative regulation of translational initiation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
