General information for g6337.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein dachsous.
Parent gene
- The parent gene g6337 is located on chr_2: 16239529..16252357 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6337 | g6337.t1 | isoform | g6337.t1 | 16239529 | 16252357 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon1 | 16239529 | 16241226 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS1 | 16239529 | 16241226 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon2 | 16242800 | 16242980 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS2 | 16242800 | 16242980 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon3 | 16243040 | 16243516 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS3 | 16243040 | 16243516 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon4 | 16243700 | 16243878 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS4 | 16243700 | 16243878 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon5 | 16243937 | 16244343 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS5 | 16243937 | 16244343 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon6 | 16244411 | 16244474 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS6 | 16244411 | 16244474 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon7 | 16244556 | 16245045 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS7 | 16244556 | 16245045 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon8 | 16245106 | 16245614 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS8 | 16245106 | 16245614 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon9 | 16245677 | 16246811 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS9 | 16245677 | 16246811 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon10 | 16246871 | 16247269 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS10 | 16246871 | 16247269 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon11 | 16247347 | 16247719 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS11 | 16247347 | 16247719 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon12 | 16247790 | 16248940 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS12 | 16247790 | 16248940 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon13 | 16249012 | 16249344 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS13 | 16249012 | 16249344 |
| chr_2 | g6337 | g6337.t1 | exon | g6337.t1.exon14 | 16249404 | 16252357 |
| chr_2 | g6337 | g6337.t1 | cds | g6337.t1.CDS14 | 16249404 | 16252357 |
| chr_2 | g6337 | g6337.t1 | TSS | g6337.t1 | NA | NA |
| chr_2 | g6337 | g6337.t1 | TTS | g6337.t1 | NA | NA |
Sequences
>g6337.t1 Gene=g6337 Length=10350
ATGAGTAGTCATCATGCATCAGGCGAATATGTGCGTGAACTGGAAGTATCAGAAGGAGTT
CCGATAGGCCATCAAATTGGTTTTATTGGTGATATTCCACAAGCAGTTGGCAGTGGTCCG
CCTTATTTAATTGTGCCTGTACCTGGAAGTTTTGTTAATTCAGATCTTGCTATAGATCAT
ACGACTGGTGAAGTTCGTACAAAAGTTCAATTAGATCGTGAAGTTAAAGCTTCTTATTCA
CTTGTGGCAATTCCATTGAGTGGACCAAATATTCGAGTAACGATTCGGGTTTTAGATGAA
AATGATAATGCACCAACATTTCCAACGCCAGTCATGAACATTGAATTTCCTGAAAATACA
CCAAGAGATGTAAAACGCACATTAAATCCAGCCAAGGACCTCGATTTAGGTCGATTCAAT
ACACAACGATATAATATTGTATCAGGAAATGTAAATAATGCATTTCGATTGTCATCACAT
CGTGAACGCGATGGTGTACTATATCTTGATTTACAAATCAATGGTTTCCTTGACCGAGAG
ACCACACCTGCATACAGTGTCCTGATTGAGGCACTTGATGGCGGTTCACCACCACTTCGT
GGTCAAATGACTGTAAATATAACAATTATTGATGTGAATGACAATCAACCGCTGTTCAAT
CAGAGTAGATATTTTGCAACAATACCCGAGAATGCAACAATTGGTACAAGCATTCTACAA
GTGTATGCAACTGATACCGACGCAGGTGATAATGGCCTTATAGAGTACTCAATTAATCGT
AGACAAAGTGATAAGGAACAAATGTTCAGAATCGATCCATCAACTGGATTGATTGTTGTA
AATAAAGCTCTCGATTTTGAACAAAAGGAGCTTCATGAGCTTGTTGTTGTAGCAAAAGAT
AATGGCGTGCAACCACTTGAAACGACAACTTTCGTTTCAATACGCGTGACTGATGTAAAT
GATAATCAGCCAGTAATCAATGTGATCTTTTTGAGTGACGATGCAACGCCGAAGATTTCA
GAGTCTGCACAACCAGGTGAATTTATTGCTCGCATTTCAGTCAATGATCCCGATTCAAAG
ACCGAATATTCCAATGTAAATGTAACATTAAATGGTGGCGATGGCCATTTTGGTCTTACG
ACAAGAGATAATATTATTTATCTAGTGATTGTTTCGTTGCCATTGGATCGTGAAATACAG
CCAAATTATACATTGAATGTCATTGCAACTGATACGGGAAATCCACCACTGCATGCTTCG
AAGACAATTTATCTTCGGGTAACGGACATAAATGATAATGTGCCACAATTTGAACAGGAG
GTTTATTATGCAAATGTTATGGAAGGTGCCGACGATCCGGGAACTTCTGTTCTTCAAGTT
GTTGCAATTGATCGTGACGAGGGCAACAATTCGGCAATAATTTATTCAATCATTGATACA
CCGAATACACACTCGCAATGGTTCCAAATTGATGCAAATTCTGGATTGATTACAACCCGC
GCGCATATTGATTGCGAGACTGAACCCGTTCCTAAATTAACAGTTATGGCAAAGGATAAT
GGTTATCCACCTCTATCGTCAACAGCCATGGTATTAGTCACAGTGCACGATGTGAACGAT
AATGAGCCGATATTCGATCAGAGCTTCTATAACGTGTCGGTCGCTGAGAATGAGGCTAAA
GGTCGCTGCATATTGAAGGTGTCAGCAACAGATCCCGATTGTGGTGTCAATGCAATTGTT
AATTACACATTTGGTGAAGGTGTCAAAAAGATGAACAATTTTGAAATTCGTTCTGACACT
GGTGAAATTTGTATATCAGGTGATTTGGATTATGAAACTAGAACTTCATATGAATTTCCT
GTTATTGCGACTGATCGAGGTGGTTTAAGTACAACAGCAATTGTAAAAATTCAAGTCACA
GATCTCAATGACAATCGACCAATTTTTTATCCACGCGAATATAATGTTTCATTACGAGAA
TCATCAACTACTTCAGCATCAGTTGTTGTTATAGCTGCTAGTGATCCTGATTCAGGTCGT
TTTGGAACTGTGACCTATCGAATTGTTGCTGGAAATGATGCAGGAATTTTTAGAATTGAT
CGAATGACTGGTGAAATTTTTGTAACACGTCCAAATATGCTTTCAAGTCGGAATCAACCA
TATCATCGTTTAAATATTTCTGCAATTGATGGTGGCGGTTTAAGAACAGCAGTTGATGCT
GAAGTCTTCATTAGCATAATTGACTCAACACAACGTCCCCCGATTTTCGATAAAACACGC
TATAACTTTTCAGTCAAAGAGGATGCAAAACGAAACACAGTTGTGGGAACTGTTTCAGCT
ACGTCAAGCAACTCAGGAAGCCGCGGTGCTGTTCGATATTCAATTTATTCGGGCGATCCC
AATGGTCTATTTACGATCGATTCAGCGACTGGAAATATTCGTGTCAATAATGTGCTTGAT
CATGAAACGAAAGCATCAGTTTTATTGAATATTCAAGCAACTAGTGGCGATCCACCTTCT
TATGGACATGCACAAGTTAACATTGAAATTGAAGATATCAATGATTCAGTTCCATCATTT
GAATCAAATTTTGTAAAAATTTCTGTTCCTGAAAATTTTGAACTTGGTGTTCCATTGTAT
GTCGTGTCAGCTTGGGATAGAGATTCAGGCAAGAGTGGTACTGTCACATATCGTCTGACA
AGTGGATCAACGACCTCATCGAACTCAAACTATGTCACATCAAATACACTCTCATCGACA
TTGTCATCAAACAATATTTTCAGCATTGATTCGCGAACGGGTCACTTGACATTAGCACAG
CATTTAGATTTTGAGACGTCCCAGCGACACACATTAATTGTGACTGCAATCGATCAAGGC
GAGCCACCATTGTCATCAAATTTGACTATTTTAGTTGAAGTGCAAGATGTCAATGACAAT
AGTCCCATTTTTGAGCGTAATGAATATACAGTGAAAGTCTTTGAGTCAATACCGATCAAC
TCGCAGATCTTACAAGTGAATGCCGTTGATATGGACACGGGAAATAATGCCAGAATCACT
TACCGTATAGCAAATCCAGCAAATGAAACACAAACTCAAAAGAGCAAGAGTCAAAAGAAT
AAAAAAATTGTCAGCAATATCCATCAAATGGATGTTTATGATCTTTTTGGAATTTTCCCA
AATAGCGGTTGGATTTATTTGCGCGGAACTCTTGATCGTGAGACTTTTGATCGATATGAA
TTGACTGTTTTGGCAAGTGACAATGGTACACCATCTGCAACTGCAACAGCTCGTGTTATT
GTAAATGTTATGGATGCTAATGACAATGATCCAAAATTTTTACAATCATCTTATGAATTT
ACAATTGAAGAAAATCTTAGACGTGGTTCAACAGTTGGTATAATTCATGCGATTGATGAT
GATTTCGACATTAATGCAGACATCAGATATAGTCTTATTCCCAGCAATAATTCATTTCAA
ATTAATGAAATTACTGGTGAGATTGTGACACGAGAACCGCTTGATCGCGAGCTTAAATCA
TCATATGACCTTGTTGCTGAAGCACGAGATCAAGGAACGCCCTACCGCAGTGCTCGAGTT
TCAGTCTTTGTAAAAGTCAGTGATGTCAATGACAATGCACCAGAAATTATTGATCCACAA
GAAGATGTCGTGAGTGTACGAGAGGAACAGCCAGCTGGCACTGAAGTAGTACGTGTTAGA
GCAGTTGATCGTGACAATGGTCATAATGCAACCATCACCTACTCAATTTTAAAGAGTCGA
GATACAGACGATTATGGTTATGAAATGTTTTCAATTGACCCCATCACTGGCCTAATTCGT
ACACGCATGTCATTGGATCATGAAGAGCATACGATTTATAGACTTGCTGTTGCTGCAACT
GATGATGGAAAGCCACCAAAACAGACTTCACGAGTGCTTCGCATTGAAGTGTTGGATTTA
AATGATCAACGACCGACATTTACAAGTTCCTCATTAGTGTTTAGAGTTTATGAAGATGTA
CCAGTTGGTTATGTTGTTGGTTCAGTGGGAAATTCAGATTATTCAGAATACGATAATGCA
ATCGTCGCTAATGAAGACATGCACATAACCTACACAATCACTCCTCTCACTAATGATGTT
ATAGCTGGAGCTTTTGATATGGATAGAGCAACAGGTTCATTGGTGGTCGCAAGACAACTT
GATCGTGAACAGCAGAGTGAATTTAGACTTGAAATTAGAGCATTAGATATCAGTGCATCA
AACAACCCACAAAGTTCTGCTGTCACAGTCAAGGTCGAAATAGCTGACTGTAATGATAAT
GCACCCGTATGGAAATATGATCCCATAATTATTGAGGTTGCTGAAGACACGGCTATTGGC
TCACTTATTTATAATTTTACCGCAACTGATGTTGATTCAGGCAGTAATAGTGAAATTCAG
TATAAACTGGTGAAGCAAGTTCCATCAACAGATGAACATGATGTTTTTGCTGTTGATCCA
TTGACTGGTGCTCTTACATTGGTTACACCTTTGGACTATGAAATGTTGACCGAATATATT
CTTATTGTAGCAGCAACAGATCAATCATCAAATGCTACAATGAGACTCACGACCTCAGTT
ACTGTTCACATAATCATACTCGATGTCAACGATCATGTTCCGAATTTTGTACAACCAAAT
ACAAAAGACACTGTCGTTTATCTAAGTGATTCAGCTACAGTTGGTCAACTTGTTACACAT
GTAATTGCTGTTGATAAAGATAGTGGTGCTAATGGACAAATTTCATACAATATCATCAGT
GGAAATGAAGATGGTCGTTTTAATATTGATGTTGAAAAAGGGTTTATTGAGCTTGCAAAA
CCTTTAATAAGAAAATTTGAGTCAGCAACAAGAACAATAAATAGTCAAAATAGCGTTAGC
AATTTGATTAGTGGAAAGTACAATCTTGTAGTCAAAGCCAGTGATCGTGGATCACCTATA
CCAAAAGAATCTCGTGTCAATATAAAAATTATCATTCAAGGATCAACTAGCAATCCACCA
AGATTTTTAGAATCTGTTTATTATGCAAATGTTACTGAAAATATTTCAATTGGTAGTTTT
GTGATAAGAGTGAATGCAAAGTCATTTAATATTGAAAATGGAGCAAATTTGACTTATGAA
ATTCCAAAAGGAATTGCAGATGATAATTTTGCTGTTGATTCTTTACGTGGAATTGTCACT
ACAAAAGGAACTTTCGACCGTGAAATTAAAGACCTTTATACATTTCCTATTTATGTTATG
GAAGCCGTTTCAACATCTTCATTTAAGAGCACTGGTATGAATGGTAGCAAAAAATCTGGA
AAGTTTTACAAAGCTCAATTTGATATGGCAACGATAGTCGTTCGTGTTTTGGACATTAAT
GATCATACTCCTGAATTTAGACAAGGCTCATGTTATCCGCTCACTATACCAGAAAATAGC
GAATCATCAATCATTCATCGTGTTGTCGCTACCGATCTTGATGAGGGACTAAATGGAGAA
ATAACTTACAGCATCACAGGCGGCAATACAGGCAATAAATTTAGTATTGACATGAACACT
GGCGAATTGACAGCTCGTCCGTTAGATAGAGAATCGCATTCACGCTATTTTCTTCAAATT
ACCGCACAAGATCGTGGAAATCCAATTTCATATCAGAGTCAGTGCAATATTTCAATCATT
GTCGAGGATGAAAATGACAATGATCCGCGCTTTGAAATGGTAAAATACAATTCATCTATT
GCTGAAGATGTGCCTATTGGAACGTCTGTGTTGACTGTTAAAGCTGTTGATGCTGATTTA
GGAATTAATGCTAGAATTACTTATACATTGGCTAATGAAACTGAATGGCTATTTAACATT
GACAACCGTAGTGGATTAATCACAACAGCTGGTTTGTTTGATCGTGAGCGTCAGCACATT
TACAATTTTATGGTTGTTGCAACAGACGGAGGACGTTATGATGCTAGATCTCAACGTGTG
CCAATTCAGATTGTCATTGACGATGTGAACGATCAAGTGCCAGTATTTGATAAATATCCG
TTCAAAGTACAAGTTGGTGCACTTATTCAACCTGGTCAGCAACTTGTGCAAGTGACAGCA
ACTGATGCTGATAAAGGAACAAATGGAGACATTGTTTACACTTTATTAAATGACAGCATT
AGCAGCAAGTTCCGCATTAATCCAACTACTGGCATATTGAGTGCAACACAGAGTTTGGCA
AGTGAAAATGGAAGACTAATTCATTTGGAAGTGATTGCAAGCGACAAGGGAAATCCACCT
CTACAAACAACTGGTTTAATTGAGCTCAGCATTGGTGACATTCCTCAAAATCATCCAGTT
TTACTTTTTCCTGAGGAATCATATAATATTACACTTAATGAAAATACTGAAGATGGTTAT
TTAGTTTTGAAATTAACTGCAGTGAGAAGTGACGGTCGAAGACCAAATAAAATTTTCTAT
TCATTTGGAAGTAACAGCGATGATGACACTTTCTCAATTGATTCACTCACTGGAGAAATT
CGAGTTCAAATCTCAAAGAAATTAGATTATGAAAGATTTCAGCGTAAAAATACAGTCAAC
AAAGAAAATGGCATGCACCTGGTTGTTGTTGCAAAGAGCGAAGGTGCACAAACATTGTAT
GGTTATTGTGAAATACATATAACATTGATAGATGAGAACGATAATGCACCGCGGTTTACA
CAACAACATTATAGTGCGGTTGTGTGGGAGGGCAATTCAAAGGGAACATTTGTGATGCAA
GTGACAGCACATGATGCTGATCAAGGTGCAAATTCACGTGTGCTATATCACATTGTCGAT
GGAAATCACGACAATGCATTCATCATTGAACCAGCATTTAGTGGAATTGTCAAGACCAAC
ATTGTACTTGATAGGGAAATTCGCGAGAAATATAGACTGAAGGTGATTGCAACGGACGAA
GGAGTGCCACAAATGACTGGCACGGCTACTATTAGTATTCATGTTGTTGATGTCAACGAC
AATCAGCCTACTTTTCCACCGCGAAGTATTTCAGTAAGCGAAGCGACGGAAGTTGGAACT
GTTTTAACTACATTAACAGCAAATGATGTCGACACTAGTCCAACAATTACATACAGTTTT
CTTACAAGTTTTAACAATGAAACGCACTTTGAAGATGCCAATGACATTGCCACGACAATA
TTTTCCATTGACAAGTTTAGTGGAAAAGTGATTTTGCAAAAACCACTAGATTATGAAGAA
CAACAAGAATATACATTAAGAGTTATTGCTTCAGATACAGCTCATGTTGCTCAGACAAGA
TTAACAATTAGAGTTTTAGATGCTAATGACAATTATCCAGTATTTCAACAAGTTGCTTAT
CATACTTCACTGCCAGATGAACCAGGAAATCCAAATGTAGAAATTATGACATTGAATGCA
ACCGATATTGATAGTGGTCAAAATGCTCTTGTTAAATACTCAATTAAAAATGCCATGGCT
GGCTTTAGTATAGGTGAAGAGTCAGGAATTCTTTATGCAAATCTCTCAAGAATAGAAATG
CCACTCAAAAATGACATTCAACTGACAGTTGTTGCTAGCGACTCAGGAATTCCATCACTC
AGTTCAACTACAACTGTTCGTATTCATATAAATTTCAAGAGTCACATTAAACCACAATAT
TTACAACATCAATATCGTACAACAATCAACGAAAATACACCAAGAGGCACAATCGTGACA
AAATTAATTGATCCAGCTGCTGAATTTTCCGATTTTAATGGAATTTTCTTTGAAATAATT
TCGGATGATGATGAAGGGATGTTTGAAGTCACATACCCAGAAAGTTATTTAATTTTGACA
AAACCACTTGATCGAGAGAAAAATGATTATTATCATCTAAGAATTCAAATGATGGAAGTA
GGAATGCAATCATCACTGCACAAGCAAGATAATTCAAGCATTATAAATGTGTTCGTTGCT
GTTGAAGATACAAATGACGAGAAACCAATATTCCAGCCAAATAAATATGAAATTGAACTT
AGTGAGTCAGTGCCTTTAAGATATAGCATAACAAAAATTATTGCCATTGACAATGATCAA
CCAAATACACCAAATTCAGAAGTTGTTTATGATATTACATCAGGAAATGATCAAGGAACT
TTCTCAATTGATTTAGTTTCTGGTGTGCTATCAGTCAATAAAATTCTTGACTATGATACT
GGCATTCAGAATTACATGCTTATCATAAGAGCTTGTGATTCAGCTATAATACCTTTCTGT
TCACTTCAACCAATGTCAATAAACTTAAAGGATGAAAACAATCACGAACCGAAATTCCCT
GTAAATGAATATGTTGAGTTTGTTGGTGAAAATGAACCAATTGGTGTCAGTGTTTTCACT
GCTCGAGCAACAGATTTGGATGCCGGTGAATATGGAAAAGTTAATTACACAATATCACCA
ACGAATGGTTTTACTGATTCAGAGGATTCCTGGAAAAAATTCAAAATTGATCCAATCAGT
GGAGTTGTCAATACAAATGCAATTTTTGACTATGAGAAGCAAAATCGGTACATCTTTGAT
ATTGTAGCGACAGACATTGGTGGAAAATCAAAAACTGTAAAGACCAAAATTATGATTGAT
GGTCGTGATGAATTTAGTCCACAATTTACTGAAAGAACTTATAGATTCATTGTTGGAACT
GCTTACAATCTTCCAGTTGGCTATATTATTGGTCATGTGACAGCAACTGACAAAGATCGT
GGTCTTGATGGACGTGTTGTTTATCAATTGACTACTCAACATGCTTTCTTTAAAGTCAAT
AGAACAACTGGAGCTATAATGATAAAGAAGAAACTCGACCCATCAGTTTCACTTGAATCT
GGACGTGATATTAGTTTAGTTGTGACTGCAAGTTCAGGCCGTCAAGGCTCTCTCACAAAC
ATGACAGTCGTTGAAGTTGTTTTCGATCCACTAGTCGATCCTGGCACAAATCTTGCTAGC
AATATGAATAATGAAAGTAATGGAGAAAGTGGAATTTCTGGCTGGATTGTTGGACTTTTA
ATTGTCATCCTCTTCGTTGTCCTTATATTTGGTGCAATTTTTGCATTTGTTCATATGAAA
AATAAAAGACATAGACATGTAGCCAAGACTGGTATCACTAATGAGGCTGTCGGAAATTCA
AATAGTTATGTTGATCCATCAGTTTTTGATACAATTCCAATTAGAGGCAATTCAAGTGGT
ACAGGACAATTTGCGCCACCAAAATATGATGAAATTCCACCTTATGCACAACATGCTGCA
AGTTCAAATTCTGGAGCTGCAACTTCAGAATTATCTACATCAGAACAATCAGGATCGAGT
GGTCGAGGATCAGCAGAAGATGATGGTGAAGATGAAGAAATAAGAATGATAAATGAAGGT
TTACGTGGTGGTGTGCATGATGGAAGATTATCAGATATTTCAGTACACAATACTCAAGAA
TATTTAGCAAGATTAGGAATAGTTGACACTGGTGCAACAGGAAATGCATCAAATTCATCA
AGAAGATGTTCTGAAAGTATGGGATTAGGTAGTACAAAAGATTCAATTCTTCATCATCAA
CTTCCATTGCACATGTTTGATGAAGAAGAAGCAAATGATGGTGATTTAACGAATTTAATT
TATGCTAAATTAAATGATGTTGCTGCTGGAAGTGAAGCTGATGAAGCCGGCACAACTGCG
GGTAGTATGAATATAGGTTCAACAGTCGATCATGTGATTATGAATAATTATAATGATGTT
CCAGTCGTTGTTGGAGGACAAGGACCAACAATGAATGGCTCATTAAGTTCAATTGTGCAT
AGTGAAGAAGAATTGACCGGAAGTTACAATTGGGATTACCTTCTCGATTGGGGTCCACAA
TATCAACCTCTAGCTCATGTTTTCTCTGAGATTGCGAGACTGAAAGACGATACGATGTCA
GTACATAGTGGAGCGAGTGCTGCATCGAGTGCAAAAAGTAAACAATCAGCTTTGCATATA
AAACATATACCACCGCTTATAACAAATGTCGCACCACGCTCAATTCCTGTGCTTTCAACA
CGAGGAAATATGGCACATTTATCAAATGCACCAAATCATTTCCTATTACCTCGTTCGCGT
GAACGTGAACAACGTTCTCCAATTAGTCATGATACAAATGGAGTCTTCAACACTTCAACA
GCCATGTCACCAAGCTTCTCGCCTTCACTTTCACCACTCGCTACACGCTCACCATCGATA
TCACCGCACGTTAATCACGTCCCAGGTGGTCATCATCTAGTTTCATTGCCACGCCAACAA
CAAACGCAATCGCGAAAGCATCAAATGTAA
>g6337.t1 Gene=g6337 Length=3449
MSSHHASGEYVRELEVSEGVPIGHQIGFIGDIPQAVGSGPPYLIVPVPGSFVNSDLAIDH
TTGEVRTKVQLDREVKASYSLVAIPLSGPNIRVTIRVLDENDNAPTFPTPVMNIEFPENT
PRDVKRTLNPAKDLDLGRFNTQRYNIVSGNVNNAFRLSSHRERDGVLYLDLQINGFLDRE
TTPAYSVLIEALDGGSPPLRGQMTVNITIIDVNDNQPLFNQSRYFATIPENATIGTSILQ
VYATDTDAGDNGLIEYSINRRQSDKEQMFRIDPSTGLIVVNKALDFEQKELHELVVVAKD
NGVQPLETTTFVSIRVTDVNDNQPVINVIFLSDDATPKISESAQPGEFIARISVNDPDSK
TEYSNVNVTLNGGDGHFGLTTRDNIIYLVIVSLPLDREIQPNYTLNVIATDTGNPPLHAS
KTIYLRVTDINDNVPQFEQEVYYANVMEGADDPGTSVLQVVAIDRDEGNNSAIIYSIIDT
PNTHSQWFQIDANSGLITTRAHIDCETEPVPKLTVMAKDNGYPPLSSTAMVLVTVHDVND
NEPIFDQSFYNVSVAENEAKGRCILKVSATDPDCGVNAIVNYTFGEGVKKMNNFEIRSDT
GEICISGDLDYETRTSYEFPVIATDRGGLSTTAIVKIQVTDLNDNRPIFYPREYNVSLRE
SSTTSASVVVIAASDPDSGRFGTVTYRIVAGNDAGIFRIDRMTGEIFVTRPNMLSSRNQP
YHRLNISAIDGGGLRTAVDAEVFISIIDSTQRPPIFDKTRYNFSVKEDAKRNTVVGTVSA
TSSNSGSRGAVRYSIYSGDPNGLFTIDSATGNIRVNNVLDHETKASVLLNIQATSGDPPS
YGHAQVNIEIEDINDSVPSFESNFVKISVPENFELGVPLYVVSAWDRDSGKSGTVTYRLT
SGSTTSSNSNYVTSNTLSSTLSSNNIFSIDSRTGHLTLAQHLDFETSQRHTLIVTAIDQG
EPPLSSNLTILVEVQDVNDNSPIFERNEYTVKVFESIPINSQILQVNAVDMDTGNNARIT
YRIANPANETQTQKSKSQKNKKIVSNIHQMDVYDLFGIFPNSGWIYLRGTLDRETFDRYE
LTVLASDNGTPSATATARVIVNVMDANDNDPKFLQSSYEFTIEENLRRGSTVGIIHAIDD
DFDINADIRYSLIPSNNSFQINEITGEIVTREPLDRELKSSYDLVAEARDQGTPYRSARV
SVFVKVSDVNDNAPEIIDPQEDVVSVREEQPAGTEVVRVRAVDRDNGHNATITYSILKSR
DTDDYGYEMFSIDPITGLIRTRMSLDHEEHTIYRLAVAATDDGKPPKQTSRVLRIEVLDL
NDQRPTFTSSSLVFRVYEDVPVGYVVGSVGNSDYSEYDNAIVANEDMHITYTITPLTNDV
IAGAFDMDRATGSLVVARQLDREQQSEFRLEIRALDISASNNPQSSAVTVKVEIADCNDN
APVWKYDPIIIEVAEDTAIGSLIYNFTATDVDSGSNSEIQYKLVKQVPSTDEHDVFAVDP
LTGALTLVTPLDYEMLTEYILIVAATDQSSNATMRLTTSVTVHIIILDVNDHVPNFVQPN
TKDTVVYLSDSATVGQLVTHVIAVDKDSGANGQISYNIISGNEDGRFNIDVEKGFIELAK
PLIRKFESATRTINSQNSVSNLISGKYNLVVKASDRGSPIPKESRVNIKIIIQGSTSNPP
RFLESVYYANVTENISIGSFVIRVNAKSFNIENGANLTYEIPKGIADDNFAVDSLRGIVT
TKGTFDREIKDLYTFPIYVMEAVSTSSFKSTGMNGSKKSGKFYKAQFDMATIVVRVLDIN
DHTPEFRQGSCYPLTIPENSESSIIHRVVATDLDEGLNGEITYSITGGNTGNKFSIDMNT
GELTARPLDRESHSRYFLQITAQDRGNPISYQSQCNISIIVEDENDNDPRFEMVKYNSSI
AEDVPIGTSVLTVKAVDADLGINARITYTLANETEWLFNIDNRSGLITTAGLFDRERQHI
YNFMVVATDGGRYDARSQRVPIQIVIDDVNDQVPVFDKYPFKVQVGALIQPGQQLVQVTA
TDADKGTNGDIVYTLLNDSISSKFRINPTTGILSATQSLASENGRLIHLEVIASDKGNPP
LQTTGLIELSIGDIPQNHPVLLFPEESYNITLNENTEDGYLVLKLTAVRSDGRRPNKIFY
SFGSNSDDDTFSIDSLTGEIRVQISKKLDYERFQRKNTVNKENGMHLVVVAKSEGAQTLY
GYCEIHITLIDENDNAPRFTQQHYSAVVWEGNSKGTFVMQVTAHDADQGANSRVLYHIVD
GNHDNAFIIEPAFSGIVKTNIVLDREIREKYRLKVIATDEGVPQMTGTATISIHVVDVND
NQPTFPPRSISVSEATEVGTVLTTLTANDVDTSPTITYSFLTSFNNETHFEDANDIATTI
FSIDKFSGKVILQKPLDYEEQQEYTLRVIASDTAHVAQTRLTIRVLDANDNYPVFQQVAY
HTSLPDEPGNPNVEIMTLNATDIDSGQNALVKYSIKNAMAGFSIGEESGILYANLSRIEM
PLKNDIQLTVVASDSGIPSLSSTTTVRIHINFKSHIKPQYLQHQYRTTINENTPRGTIVT
KLIDPAAEFSDFNGIFFEIISDDDEGMFEVTYPESYLILTKPLDREKNDYYHLRIQMMEV
GMQSSLHKQDNSSIINVFVAVEDTNDEKPIFQPNKYEIELSESVPLRYSITKIIAIDNDQ
PNTPNSEVVYDITSGNDQGTFSIDLVSGVLSVNKILDYDTGIQNYMLIIRACDSAIIPFC
SLQPMSINLKDENNHEPKFPVNEYVEFVGENEPIGVSVFTARATDLDAGEYGKVNYTISP
TNGFTDSEDSWKKFKIDPISGVVNTNAIFDYEKQNRYIFDIVATDIGGKSKTVKTKIMID
GRDEFSPQFTERTYRFIVGTAYNLPVGYIIGHVTATDKDRGLDGRVVYQLTTQHAFFKVN
RTTGAIMIKKKLDPSVSLESGRDISLVVTASSGRQGSLTNMTVVEVVFDPLVDPGTNLAS
NMNNESNGESGISGWIVGLLIVILFVVLIFGAIFAFVHMKNKRHRHVAKTGITNEAVGNS
NSYVDPSVFDTIPIRGNSSGTGQFAPPKYDEIPPYAQHAASSNSGAATSELSTSEQSGSS
GRGSAEDDGEDEEIRMINEGLRGGVHDGRLSDISVHNTQEYLARLGIVDTGATGNASNSS
RRCSESMGLGSTKDSILHHQLPLHMFDEEEANDGDLTNLIYAKLNDVAAGSEADEAGTTA
GSMNIGSTVDHVIMNNYNDVPVVVGGQGPTMNGSLSSIVHSEEELTGSYNWDYLLDWGPQ
YQPLAHVFSEIARLKDDTMSVHSGASAASSAKSKQSALHIKHIPPLITNVAPRSIPVLST
RGNMAHLSNAPNHFLLPRSREREQRSPISHDTNGVFNTSTAMSPSFSPSLSPLATRSPSI
SPHVNHVPGGHHLVSLPRQQQTQSRKHQM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 113 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 13 | 103 | 2.31645E-10 |
| 107 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 111 | 215 | 2.69147E-21 |
| 98 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 224 | 322 | 3.29102E-34 |
| 114 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 339 | 433 | 9.55096E-20 |
| 121 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 441 | 541 | 7.78527E-30 |
| 105 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 550 | 645 | 1.39478E-26 |
| 117 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 653 | 748 | 2.39504E-21 |
| 124 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 761 | 855 | 8.4127E-28 |
| 109 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 867 | 980 | 8.17758E-26 |
| 112 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 988 | 1109 | 2.4025E-29 |
| 119 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1117 | 1212 | 3.65132E-31 |
| 101 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1223 | 1322 | 9.09526E-27 |
| 99 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1331 | 1440 | 3.97656E-17 |
| 108 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1448 | 1552 | 7.27364E-27 |
| 111 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1565 | 1673 | 1.82579E-17 |
| 103 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1686 | 1802 | 1.27829E-16 |
| 100 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1812 | 1907 | 8.75178E-31 |
| 115 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 1916 | 2011 | 6.16609E-27 |
| 106 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2019 | 2117 | 1.14384E-21 |
| 110 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2127 | 2235 | 6.36493E-19 |
| 116 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2243 | 2341 | 1.98019E-31 |
| 123 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2347 | 2451 | 4.91844E-21 |
| 118 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2460 | 2550 | 4.03032E-16 |
| 102 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2564 | 2666 | 2.07708E-12 |
| 120 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2676 | 2775 | 2.72373E-20 |
| 104 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2783 | 2884 | 2.26987E-19 |
| 122 | g6337.t1 | CDD | cd11304 | Cadherin_repeat | 2903 | 2986 | 3.02072E-13 |
| 94 | g6337.t1 | Coils | Coil | Coil | 3449 | 3449 | - |
| 82 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 42 | 105 | 1.2E-9 |
| 76 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 106 | 214 | 2.4E-22 |
| 73 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 215 | 324 | 3.2E-35 |
| 72 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 325 | 432 | 1.7E-20 |
| 71 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 433 | 540 | 1.9E-31 |
| 74 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 541 | 644 | 4.6E-30 |
| 86 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 645 | 751 | 3.6E-22 |
| 70 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 752 | 855 | 1.5E-25 |
| 79 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 856 | 979 | 3.6E-29 |
| 69 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 980 | 1108 | 3.2E-32 |
| 84 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1109 | 1213 | 9.3E-32 |
| 93 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1214 | 1322 | 3.6E-29 |
| 78 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1323 | 1439 | 2.9E-21 |
| 83 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1440 | 1550 | 1.4E-28 |
| 67 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1551 | 1675 | 6.7E-19 |
| 68 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1680 | 1810 | 1.1E-19 |
| 87 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1811 | 1908 | 3.0E-26 |
| 89 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 1909 | 2011 | 9.0E-29 |
| 91 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2012 | 2121 | 1.4E-21 |
| 92 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2122 | 2237 | 9.9E-19 |
| 85 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2238 | 2341 | 1.1E-31 |
| 81 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2342 | 2450 | 2.0E-21 |
| 80 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2451 | 2553 | 4.7E-19 |
| 90 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2556 | 2675 | 1.8E-18 |
| 77 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2676 | 2776 | 8.0E-16 |
| 88 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2777 | 2884 | 2.2E-20 |
| 75 | g6337.t1 | Gene3D | G3DSA:2.60.40.60 | Cadherins | 2885 | 2990 | 5.3E-14 |
| 165 | g6337.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3096 | 3131 | - |
| 166 | g6337.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3097 | 3123 | - |
| 167 | g6337.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3369 | 3394 | - |
| 27 | g6337.t1 | PANTHER | PTHR24025:SF26 | PUTATIVE-RELATED | 13 | 381 | 0.0 |
| 30 | g6337.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 13 | 381 | 0.0 |
| 29 | g6337.t1 | PANTHER | PTHR24025:SF26 | PUTATIVE-RELATED | 388 | 709 | 0.0 |
| 32 | g6337.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 388 | 709 | 0.0 |
| 28 | g6337.t1 | PANTHER | PTHR24025:SF26 | PUTATIVE-RELATED | 722 | 3448 | 0.0 |
| 31 | g6337.t1 | PANTHER | PTHR24025 | DESMOGLEIN FAMILY MEMBER | 722 | 3448 | 0.0 |
| 39 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 54 | 73 | 1.2E-35 |
| 36 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 219 | 248 | 1.2E-35 |
| 33 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 402 | 414 | 1.2E-35 |
| 35 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 524 | 543 | 1.2E-35 |
| 38 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 543 | 556 | 1.2E-35 |
| 34 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 599 | 625 | 1.2E-35 |
| 37 | g6337.t1 | PRINTS | PR00205 | Cadherin signature | 966 | 983 | 1.2E-35 |
| 20 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 113 | 209 | 6.1E-12 |
| 3 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 224 | 317 | 1.4E-22 |
| 18 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 338 | 427 | 8.3E-11 |
| 26 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 442 | 535 | 6.8E-20 |
| 12 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 550 | 640 | 2.0E-17 |
| 6 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 654 | 735 | 5.0E-12 |
| 7 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 761 | 851 | 7.8E-18 |
| 1 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 867 | 975 | 5.6E-15 |
| 4 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1031 | 1103 | 1.2E-12 |
| 21 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1118 | 1206 | 3.2E-19 |
| 22 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1223 | 1318 | 3.4E-21 |
| 17 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1334 | 1434 | 7.1E-10 |
| 10 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1451 | 1544 | 3.9E-17 |
| 13 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1567 | 1672 | 4.1E-14 |
| 11 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1687 | 1766 | 3.4E-8 |
| 15 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1812 | 1899 | 1.8E-18 |
| 9 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 1916 | 2006 | 1.7E-16 |
| 24 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2030 | 2110 | 7.6E-16 |
| 19 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2128 | 2229 | 9.0E-11 |
| 8 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2244 | 2335 | 2.7E-20 |
| 16 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2349 | 2445 | 2.8E-11 |
| 5 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2470 | 2550 | 4.6E-11 |
| 23 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2565 | 2640 | 3.9E-7 |
| 2 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2676 | 2755 | 2.7E-12 |
| 14 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2788 | 2879 | 6.2E-12 |
| 25 | g6337.t1 | Pfam | PF00028 | Cadherin domain | 2903 | 2986 | 2.7E-8 |
| 96 | g6337.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 3011 | - |
| 97 | g6337.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 3012 | 3037 | - |
| 95 | g6337.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 3038 | 3449 | - |
| 157 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 207 | 217 | - |
| 154 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 425 | 435 | - |
| 158 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 533 | 543 | - |
| 159 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 637 | 647 | - |
| 156 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 972 | 982 | - |
| 163 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1101 | 1111 | - |
| 155 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1204 | 1214 | - |
| 160 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1544 | 1554 | - |
| 161 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1794 | 1804 | - |
| 153 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 1899 | 1909 | - |
| 162 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2333 | 2343 | - |
| 164 | g6337.t1 | ProSitePatterns | PS00232 | Cadherin domain signature. | 2443 | 2453 | - |
| 187 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 42 | 107 | 10.988 |
| 190 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 108 | 219 | 19.735 |
| 185 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 220 | 326 | 29.886 |
| 192 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 339 | 437 | 22.695 |
| 194 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 438 | 545 | 26.159 |
| 180 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 546 | 649 | 27.167 |
| 189 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 650 | 756 | 18.88 |
| 183 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 757 | 860 | 22.498 |
| 181 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 861 | 984 | 27.189 |
| 170 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 985 | 1113 | 28.241 |
| 174 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1114 | 1216 | 27.628 |
| 169 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1218 | 1327 | 28.768 |
| 186 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1328 | 1444 | 22.958 |
| 176 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1445 | 1556 | 26.641 |
| 178 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1560 | 1682 | 19.67 |
| 184 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1683 | 1806 | 20.327 |
| 171 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1808 | 1911 | 23.835 |
| 193 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 1912 | 2016 | 26.488 |
| 191 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2017 | 2121 | 19.933 |
| 182 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2124 | 2239 | 19.648 |
| 173 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2240 | 2345 | 28.943 |
| 177 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2344 | 2455 | 24.8 |
| 179 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2456 | 2560 | 13.772 |
| 175 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2561 | 2671 | 19.385 |
| 188 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2672 | 2779 | 21.73 |
| 172 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2780 | 2889 | 18.924 |
| 168 | g6337.t1 | ProSiteProfiles | PS50268 | Cadherins domain profile. | 2903 | 2996 | 12.369 |
| 131 | g6337.t1 | SMART | SM00112 | CA_2 | 33 | 105 | 0.01 |
| 136 | g6337.t1 | SMART | SM00112 | CA_2 | 129 | 217 | 1.6E-14 |
| 129 | g6337.t1 | SMART | SM00112 | CA_2 | 241 | 324 | 3.2E-30 |
| 140 | g6337.t1 | SMART | SM00112 | CA_2 | 352 | 435 | 7.8E-19 |
| 150 | g6337.t1 | SMART | SM00112 | CA_2 | 460 | 543 | 5.3E-30 |
| 134 | g6337.t1 | SMART | SM00112 | CA_2 | 567 | 647 | 6.9E-25 |
| 145 | g6337.t1 | SMART | SM00112 | CA_2 | 671 | 754 | 1.4E-11 |
| 148 | g6337.t1 | SMART | SM00112 | CA_2 | 778 | 858 | 2.8E-17 |
| 141 | g6337.t1 | SMART | SM00112 | CA_2 | 882 | 982 | 2.0E-28 |
| 151 | g6337.t1 | SMART | SM00112 | CA_2 | 1006 | 1111 | 3.0E-27 |
| 128 | g6337.t1 | SMART | SM00112 | CA_2 | 1135 | 1214 | 3.3E-28 |
| 137 | g6337.t1 | SMART | SM00112 | CA_2 | 1239 | 1325 | 2.2E-24 |
| 133 | g6337.t1 | SMART | SM00112 | CA_2 | 1358 | 1442 | 1.1E-16 |
| 130 | g6337.t1 | SMART | SM00112 | CA_2 | 1466 | 1554 | 2.0E-23 |
| 127 | g6337.t1 | SMART | SM00112 | CA_2 | 1581 | 1680 | 4.8E-8 |
| 138 | g6337.t1 | SMART | SM00112 | CA_2 | 1704 | 1804 | 7.9E-10 |
| 139 | g6337.t1 | SMART | SM00112 | CA_2 | 1828 | 1909 | 5.9E-29 |
| 144 | g6337.t1 | SMART | SM00112 | CA_2 | 1933 | 2014 | 4.2E-22 |
| 143 | g6337.t1 | SMART | SM00112 | CA_2 | 2038 | 2119 | 1.2E-18 |
| 126 | g6337.t1 | SMART | SM00112 | CA_2 | 2145 | 2237 | 2.4E-16 |
| 147 | g6337.t1 | SMART | SM00112 | CA_2 | 2261 | 2343 | 4.2E-26 |
| 149 | g6337.t1 | SMART | SM00112 | CA_2 | 2365 | 2453 | 2.3E-20 |
| 152 | g6337.t1 | SMART | SM00112 | CA_2 | 2478 | 2558 | 3.1E-12 |
| 146 | g6337.t1 | SMART | SM00112 | CA_2 | 2585 | 2669 | 1.8E-5 |
| 142 | g6337.t1 | SMART | SM00112 | CA_2 | 2693 | 2777 | 4.6E-16 |
| 135 | g6337.t1 | SMART | SM00112 | CA_2 | 2801 | 2887 | 4.1E-13 |
| 132 | g6337.t1 | SMART | SM00112 | CA_2 | 2913 | 2996 | 0.028 |
| 57 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 54 | 107 | 6.85E-6 |
| 54 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 95 | 226 | 4.32E-23 |
| 48 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 207 | 327 | 3.99E-34 |
| 43 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 314 | 447 | 2.22E-20 |
| 51 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 430 | 538 | 3.27E-28 |
| 58 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 539 | 649 | 1.1E-26 |
| 59 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 643 | 756 | 6.42E-21 |
| 45 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 753 | 853 | 1.01E-22 |
| 60 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 853 | 977 | 2.0E-24 |
| 61 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 977 | 1105 | 5.89E-28 |
| 56 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1101 | 1218 | 1.57E-29 |
| 55 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1209 | 1319 | 1.08E-23 |
| 41 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1320 | 1437 | 1.26E-16 |
| 42 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1432 | 1559 | 4.84E-27 |
| 53 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1544 | 1680 | 9.85E-16 |
| 40 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1677 | 1806 | 9.28E-16 |
| 50 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1800 | 1911 | 2.88E-25 |
| 64 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 1905 | 2008 | 3.93E-25 |
| 44 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2004 | 2121 | 6.15E-22 |
| 66 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2122 | 2239 | 2.71E-13 |
| 47 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2227 | 2352 | 5.07E-32 |
| 46 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2338 | 2447 | 6.94E-18 |
| 49 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2443 | 2553 | 9.16E-19 |
| 62 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2557 | 2671 | 4.28E-12 |
| 65 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2665 | 2779 | 1.2E-18 |
| 63 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2767 | 2896 | 7.85E-20 |
| 52 | g6337.t1 | SUPERFAMILY | SSF49313 | Cadherin-like | 2878 | 2987 | 4.14E-13 |
| 125 | g6337.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 3015 | 3037 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0007155 | cell adhesion | BP |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | BP |
| GO:0005509 | calcium ion binding | MF |
| GO:0005886 | plasma membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K16507 (protocadherin-16/23)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
