Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6398 g6398.t1 isoform g6398.t1 16860120 16861456
chr_2 g6398 g6398.t1 exon g6398.t1.exon1 16860120 16860287
chr_2 g6398 g6398.t1 cds g6398.t1.CDS1 16860120 16860287
chr_2 g6398 g6398.t1 exon g6398.t1.exon2 16860345 16860487
chr_2 g6398 g6398.t1 cds g6398.t1.CDS2 16860345 16860487
chr_2 g6398 g6398.t1 exon g6398.t1.exon3 16860549 16860719
chr_2 g6398 g6398.t1 cds g6398.t1.CDS3 16860549 16860719
chr_2 g6398 g6398.t1 exon g6398.t1.exon4 16861260 16861285
chr_2 g6398 g6398.t1 cds g6398.t1.CDS4 16861260 16861285
chr_2 g6398 g6398.t1 exon g6398.t1.exon5 16861350 16861456
chr_2 g6398 g6398.t1 cds g6398.t1.CDS5 16861350 16861456
chr_2 g6398 g6398.t1 TSS g6398.t1 NA NA
chr_2 g6398 g6398.t1 TTS g6398.t1 NA NA

Sequences

>g6398.t1 Gene=g6398 Length=615
ATGCCAGAATATAAAGTTTTTTACTTTAATGTAAAAGCTCTCGGTGAGCCACTTCGTTTC
TTGCTCTCATATGGAAATTTACCCTTTGAGGATGTTCGTATTTCCAGGAATGATTGGCCT
GCACTAAAACCAAGCATGCCTATGAATCAGTTGCCTGTTTTGGAAGTTGATGGAAAGCGT
GTAAATCAGTCGCTTGCATGCTGCCGTTTTATTGCCAAAACTATTGGTTCCCTTGCTGGT
AACGATGACTGGGAAAATTTACAAATTGACACTGTTGCAGATACTGTCAATGATTTCCGT
CTAAAAATTGCTGTGGTTTCATATGAACCAGATGATGAAGTTAAGGAAAAGAAGCTTCAA
ACTTTGAATAATGAAGTTATTCCATTTTATTTGGAAAAATTAGAAGATATTGCACGAGAA
AATGGTGGATATTTATCACTTGGCCGACTTACATGGGCTGATTTCTATTTTGCAGGAATT
ATTGAATATCTCAACTATTTAGCCAAACAAGATTTAACAGCCAATCATGAAAATTTGAGA
AAAGTCGTTGATAATGTTATCAATCAGAGTCAAGTTCAAGAATGGATTGCAAAGAGACCA
CAAACTGATATCTAA

>g6398.t1 Gene=g6398 Length=204
MPEYKVFYFNVKALGEPLRFLLSYGNLPFEDVRISRNDWPALKPSMPMNQLPVLEVDGKR
VNQSLACCRFIAKTIGSLAGNDDWENLQIDTVADTVNDFRLKIAVVSYEPDDEVKEKKLQ
TLNNEVIPFYLEKLEDIARENGGYLSLGRLTWADFYFAGIIEYLNYLAKQDLTANHENLR
KVVDNVINQSQVQEWIAKRPQTDI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g6398.t1 CDD cd03039 GST_N_Sigma_like 4 73 1.56469E-28
10 g6398.t1 CDD cd03192 GST_C_Sigma_like 84 186 2.37352E-28
9 g6398.t1 Coils Coil Coil 169 189 -
8 g6398.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 81 5.3E-30
7 g6398.t1 Gene3D G3DSA:1.20.1050.10 - 82 188 1.4E-41
3 g6398.t1 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 204 3.3E-89
4 g6398.t1 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 204 3.3E-89
1 g6398.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 13 72 3.1E-6
2 g6398.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 97 199 4.5E-16
13 g6398.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 23.986
12 g6398.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 82 204 19.203
14 g6398.t1 SFLD SFLDG01205 AMPS.1 1 202 0.0
15 g6398.t1 SFLD SFLDG00363 AMPS (cytGST): Alpha-, Mu-, Pi-, and Sigma-like 1 202 0.0
5 g6398.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 75 2.9E-18
6 g6398.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 78 203 4.69E-29

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed