General information for g642.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial fission 1 protein.
Parent gene
- The parent gene g642 is located on chr_3: 4865775..4872796 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g642 | g642.t12 | TTS | g642.t12 | 4863833 | 4863833 |
| chr_3 | g642 | g642.t12 | isoform | g642.t12 | 4864620 | 4866302 |
| chr_3 | g642 | g642.t12 | exon | g642.t12.exon1 | 4864620 | 4865704 |
| chr_3 | g642 | g642.t12 | cds | g642.t12.CDS1 | 4865588 | 4865704 |
| chr_3 | g642 | g642.t12 | exon | g642.t12.exon2 | 4865770 | 4865827 |
| chr_3 | g642 | g642.t12 | cds | g642.t12.CDS2 | 4865770 | 4865827 |
| chr_3 | g642 | g642.t12 | exon | g642.t12.exon3 | 4865884 | 4866302 |
| chr_3 | g642 | g642.t12 | cds | g642.t12.CDS3 | 4865884 | 4866095 |
| chr_3 | g642 | g642.t12 | TSS | g642.t12 | 4866370 | 4866370 |
Sequences
>g642.t12 Gene=g642 Length=1562
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAAGTAAGTTATATGAAAATTTCGCAATTTCCTTTTGCCATT
GAACGAGATGAAAAAAATCTTCTATGACTCATTCATATATGAAATTTTGTTTTTTTCTTT
ATTTTCCAGAAAATCGAGAAAGTTTATATGAAAGAGTTGACAGAAAAGAAATTTGTATCA
GCAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATATGGTGCAGATATA
AATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAAAATAAGAGAGAC
TACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCAACAGCACAAAAA
TATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATTTTATTAGATGAA
CATATTGAGACAGAAATGAGAAAAGAATTCAAAAGGGATGCAGCAGTTGCTGGTGGTGCT
TTGTTAGTTTTTGGTGGTTTACTTGGTGTTGGATTTGCTCTTGCTAAAAAGTAATAATTT
TTTTGTTTTTAAAGTGAATTTAGTGACAGTATAAAATCTACTTTTCTAGTCTTATAATGG
GAAAAAGTTTAATTATAACTTTTCTTGATAATTTCGCATGGTTAACAGTTAAATTTTTAT
GGAACAATATGGACATAATTGCGAATATAATATGGAAATTTGTCAAAATGGGTTTTCTAA
TTTAAAAGTTTTATTCAAATTGATAAAACTTCTTGAAATTTTAAAACTAACAAAATTTCC
TTCGAGAATTTGAAAAAAGTTTATGCTTCATCATAAAATGTTTTTGACTGTTCTAATTAT
TAGAAATTAAACAATATTAGGCATTCATTCCTTTTTATTTTATTTTAGAACATACATGAA
TGTTTTAGACTTATATAAAGACTTTTAAAAATTTCAATACTTTTGGAATTTTATTTTTCA
AATTTTTAGGGTAGCTTTGTTATTTCTTTTCTTCGGTTTTAAACATAAACTATCGTCAAA
AAAAATTTTATTATCAATAGTCAATAGTCCTATAGAATGATTTGTTTTTTCTATTTCAGA
TAAAGAAAGTTTTATAGAAAGTTAACTAAAAATTAAAAGACTTCCATAAAAAGTTTATTG
AAGTGATGAAGTTCACAAAATCAAATAATTTCATTGATAAGTGCCCCACTCGTTTTGATC
GAAAGTAATTTCATAATATTATGAAATTTTTAAGAAACTTTTTCACTTTAAAAGACTAGT
CAAATAAATTTTACCCGTTATTTTTTCATCTATAACTTAATTAATTGAACTTTTATTTAT
TATCATTTAATGATGTCTTTTACTAATTATTATCATTTTATTTCACATTAATAAATTATT
TATTTTCATCATAATAACAAAATTTCATCTCATTCTTAACAAAAATTTTGTAATAATTTT
TTTACAGACACTATGACAAGAAGAAACAAGAAAAAGAAGAAATGAAGCCGTCAAGTGATT
GA
>g642.t12 Gene=g642 Length=128
MKELTEKKFVSAKTQFEYAWCLVRSKYGADINNGIKNFESLCKDDPENKRDYIYYIAIGY
IRLKDLPTAQKYVKAFLEIEPNNHQVILLDEHIETEMRKEFKRDAAVAGGALLVFGGLLG
VGFALAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g642.t12 | CDD | cd12212 | Fis1 | 10 | 100 | 3.03486E-28 |
| 6 | g642.t12 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 125 | 1.2E-35 |
| 3 | g642.t12 | PANTHER | PTHR13247 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 | 7 | 125 | 7.3E-27 |
| 4 | g642.t12 | PANTHER | PTHR13247:SF0 | MITOCHONDRIAL FISSION 1 PROTEIN | 7 | 125 | 7.3E-27 |
| 10 | g642.t12 | PIRSF | PIRSF008835 | TPR_repeat_11_Fis1 | 1 | 128 | 1.1E-38 |
| 2 | g642.t12 | Pfam | PF14852 | Fis1 N-terminal tetratricopeptide repeat | 14 | 45 | 1.1E-11 |
| 1 | g642.t12 | Pfam | PF14853 | Fis1 C-terminal tetratricopeptide repeat | 50 | 100 | 2.5E-18 |
| 7 | g642.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 104 | - |
| 9 | g642.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 126 | - |
| 8 | g642.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 127 | 128 | - |
| 5 | g642.t12 | SUPERFAMILY | SSF48452 | TPR-like | 5 | 127 | 3.04E-32 |
| 12 | g642.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 126 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0000266 | mitochondrial fission | BP |
KEGG
Orthology
- This transcript has been annotated with K17969 (mitochondrial fission 1 protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
