Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g642 | g642.t20 | TTS | g642.t20 | 4864730 | 4864730 |
chr_3 | g642 | g642.t20 | isoform | g642.t20 | 4865397 | 4866302 |
chr_3 | g642 | g642.t20 | exon | g642.t20.exon1 | 4865397 | 4865532 |
chr_3 | g642 | g642.t20 | cds | g642.t20.CDS1 | 4865397 | 4865532 |
chr_3 | g642 | g642.t20 | exon | g642.t20.exon2 | 4865592 | 4865704 |
chr_3 | g642 | g642.t20 | cds | g642.t20.CDS2 | 4865592 | 4865704 |
chr_3 | g642 | g642.t20 | exon | g642.t20.exon3 | 4865770 | 4865827 |
chr_3 | g642 | g642.t20 | cds | g642.t20.CDS3 | 4865770 | 4865827 |
chr_3 | g642 | g642.t20 | exon | g642.t20.exon4 | 4865884 | 4866302 |
chr_3 | g642 | g642.t20 | cds | g642.t20.CDS4 | 4865884 | 4866095 |
chr_3 | g642 | g642.t20 | TSS | g642.t20 | 4866370 | 4866370 |
>g642.t20 Gene=g642 Length=726
ATGTTTACTTCATTTAACACTGATAAAAATCGAGATATCGAAGAATTGTTGAGTGACACA
GTGTCAGCACAGGATTTAGAAGTAAGTTATATGAAAATTTCGCAATTTCCTTTTGCCATT
GAACGAGATGAAAAAAATCTTCTATGACTCATTCATATATGAAATTTTGTTTTTTTCTTT
ATTTTCCAGAAAATCGAGAAAGTTTATATGAAAGAGTTGACAGAAAAGAAATTTGTATCA
GCAAAAACACAATTCGAGTATGCATGGTGTTTAGTAAGAAGCAAATATGGTGCAGATATA
AATAATGGAATCAAAAATTTTGAATCACTTTGTAAAGATGATCCAGAAAATAAGAGAGAC
TACATTTATTACATTGCAATTGGTTATATTCGACTTAAAGACTTACCAACAGCACAAAAA
TATGTGAAAGCTTTCCTTGAAATTGAACCAAATAATCATCAAGTGATTTTATTAGATGAA
CATATTGAGACAGAAATGAGAAAAGAATTCAAAAGGGATGCAGCAGTTGCTGGTGGTGCT
TTGTTAGTTTTTGGTGGTTTACTTGGTGTTGGATTTGCTCTTGCTAAAAATCTTATAATG
GGAAAAAGTTTAATTATAACTTTTCTTGATAATTTCGCATGGTTAACAGTTAAATTTTTA
TGGAACAATATGGACATAATTGCGAATATAATATGGAAATTTGTCAAAATGGGTTTTCTA
ATTTAA
>g642.t20 Gene=g642 Length=172
MKELTEKKFVSAKTQFEYAWCLVRSKYGADINNGIKNFESLCKDDPENKRDYIYYIAIGY
IRLKDLPTAQKYVKAFLEIEPNNHQVILLDEHIETEMRKEFKRDAAVAGGALLVFGGLLG
VGFALAKNLIMGKSLIITFLDNFAWLTVKFLWNNMDIIANIIWKFVKMGFLI
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
14 | g642.t20 | CDD | cd12212 | Fis1 | 10 | 100 | 2.14517E-29 |
8 | g642.t20 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 126 | 3.4E-35 |
3 | g642.t20 | PANTHER | PTHR13247 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 | 7 | 125 | 1.7E-26 |
4 | g642.t20 | PANTHER | PTHR13247:SF0 | MITOCHONDRIAL FISSION 1 PROTEIN | 7 | 125 | 1.7E-26 |
2 | g642.t20 | Pfam | PF14852 | Fis1 N-terminal tetratricopeptide repeat | 14 | 45 | 1.8E-11 |
1 | g642.t20 | Pfam | PF14853 | Fis1 C-terminal tetratricopeptide repeat | 50 | 100 | 4.6E-18 |
9 | g642.t20 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 104 | - |
12 | g642.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 126 | - |
11 | g642.t20 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 127 | 131 | - |
13 | g642.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 132 | 152 | - |
10 | g642.t20 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 153 | 172 | - |
7 | g642.t20 | SUPERFAMILY | SSF48452 | TPR-like | 5 | 127 | 7.59E-32 |
6 | g642.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 126 | - |
5 | g642.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 152 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005515 | protein binding | MF |
GO:0000266 | mitochondrial fission | BP |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.