General information for g6423.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t10 | isoform | g6423.t10 | 16906729 | 16909496 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon5 | 16908498 | 16908772 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS5 | 16908498 | 16908772 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon6 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t10 | cds | g6423.t10.CDS6 | 16908911 | 16909042 |
| chr_2 | g6423 | g6423.t10 | exon | g6423.t10.exon7 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t10 | TTS | g6423.t10 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t10 | TSS | g6423.t10 | NA | NA |
Sequences
>g6423.t10 Gene=g6423 Length=1139
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGATACCGGTGTATTGGAATATCCAAACAATCAAATAGTTGTCCAAAGACCATCA
ATTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACG
ATTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAAT
ACATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAA
GCAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATC
AATTTTGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGA
AGCCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTG
TTTCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATT
TCAAATTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGA
ACACAAATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTA
AAAGAGATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCT
ATCCTGTGGATTTAAATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTAC
CTCGTTTCATTTATGACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAA
ATGTCGGTGATGCTCTCTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGCTGT
>g6423.t10 Gene=g6423 Length=245
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVDTGVLEYPNNQIVVQRPS
IWAIDLKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQ
AKMWRFNHNFFFFNPFEGIINFDCNSNGMMEFFRLPYRRRSQMVLEQLSFILLVLIVNLL
FQLKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6423.t10 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 215 | 2.3E-51 |
| 2 | g6423.t10 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 201 | 6.3E-74 |
| 3 | g6423.t10 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 201 | 6.3E-74 |
| 1 | g6423.t10 | Pfam | PF03022 | Major royal jelly protein | 86 | 199 | 1.3E-32 |
| 7 | g6423.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 223 | - |
| 9 | g6423.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 243 | - |
| 8 | g6423.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 244 | 245 | - |
| 5 | g6423.t10 | SUPERFAMILY | SSF63825 | YWTD domain | 19 | 196 | 1.83E-5 |
| 4 | g6423.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 223 | 241 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed