Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6423 g6423.t11 isoform g6423.t11 16906729 16909691
chr_2 g6423 g6423.t11 exon g6423.t11.exon1 16906729 16906759
chr_2 g6423 g6423.t11 cds g6423.t11.CDS1 16906729 16906759
chr_2 g6423 g6423.t11 exon g6423.t11.exon2 16907987 16908180
chr_2 g6423 g6423.t11 cds g6423.t11.CDS2 16907987 16908180
chr_2 g6423 g6423.t11 exon g6423.t11.exon3 16908257 16908352
chr_2 g6423 g6423.t11 cds g6423.t11.CDS3 16908257 16908352
chr_2 g6423 g6423.t11 exon g6423.t11.exon4 16908498 16908777
chr_2 g6423 g6423.t11 cds g6423.t11.CDS4 16908498 16908509
chr_2 g6423 g6423.t11 exon g6423.t11.exon5 16908911 16909281
chr_2 g6423 g6423.t11 exon g6423.t11.exon6 16909335 16909496
chr_2 g6423 g6423.t11 exon g6423.t11.exon7 16909561 16909691
chr_2 g6423 g6423.t11 TTS g6423.t11 16909746 16909746
chr_2 g6423 g6423.t11 TSS g6423.t11 NA NA

Sequences

>g6423.t11 Gene=g6423 Length=1265
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGGTATGCAAAACTTGACAATCAAATAGTTGTCCAAAGACCATCAATTTGGGCTA
TTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACGATTGTGCCAA
ATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAATACATTTGCTT
ATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAAGCAAAAATGT
GGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATCAATTTTTTTT
AGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAGCCA
AATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTTTCA
ACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTCAAA
TTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAACACA
AATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAAAGA
GATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTATCCT
GTGGATTTAAATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTACCTCGT
TTCATTTATGACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAAATGTC
GGTGATGCTCTCTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGCTGTTGGTGC
ACTATGGTGAAGTAAAATTGCAACAATTGCGAAAGAGAGTGAGATAGAGTAGAAAAGTTT
CCTCTTATACAAGTGAATTATTTTAAAATTGTTATTAAAATTCTACTGGCGCACTTTAAT
AAAAC

>g6423.t11 Gene=g6423 Length=110
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVGMQNLTIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g6423.t11 Gene3D G3DSA:2.120.10.30 TolB 2 110 0
1 g6423.t11 PANTHER PTHR10009 PROTEIN YELLOW-RELATED 12 103 0
2 g6423.t11 PANTHER PTHR10009:SF10 L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED 12 103 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed